Magnesium in PDB 8asl: Rcii/Psi Complex, Class 2

All present enzymatic activity of Rcii/Psi Complex, Class 2:
1.10.3.9; 1.97.1.12;

The structure of Rcii/Psi Complex, Class 2 also contains other interesting chemical elements:

Iron

(Fe)

14 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 102;

Binding sites:

The binding sites of Magnesium atom in the Rcii/Psi Complex, Class 2 (pdb code 8asl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 102 binding sites of Magnesium where determined in the Rcii/Psi Complex, Class 2, PDB code: 8asl:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg801 b:39.2 occ:1.00 MG a:CL0801 0.0 39.2 1.0 NE2 a:HIS676 1.9 32.3 1.0 NB a:CL0801 2.0 34.4 1.0 ND a:CL0801 2.0 42.5 1.0 NA a:CL0801 2.1 33.9 1.0 NC a:CL0801 2.1 32.8 1.0 CE1 a:HIS676 2.8 38.1 1.0 C4D a:CL0801 2.9 32.1 1.0 C1B a:CL0801 3.0 33.1 1.0 CD2 a:HIS676 3.0 33.3 1.0 C4A a:CL0801 3.0 29.6 1.0 C4B a:CL0801 3.0 32.4 1.0 C1C a:CL0801 3.1 30.8 1.0 C4C a:CL0801 3.1 26.2 1.0 C1A a:CL0801 3.1 30.5 1.0 C1D a:CL0801 3.1 27.5 1.0 CHB a:CL0801 3.4 29.0 1.0 CHC a:CL0801 3.4 29.0 1.0 CHA a:CL0801 3.5 23.3 1.0 CHD a:CL0801 3.5 25.1 1.0 CAB b:CLA3002 3.6 28.2 1.0 ND1 a:HIS676 3.9 27.0 1.0 C3B b:CLA3002 4.0 23.5 1.0 CG a:HIS676 4.1 30.5 1.0 C3D a:CL0801 4.2 34.6 1.0 C2B a:CL0801 4.3 32.7 1.0 C3B a:CL0801 4.3 33.4 1.0 CHC b:CLA3002 4.3 36.6 1.0 C2C a:CL0801 4.3 37.9 1.0 C2D a:CL0801 4.3 31.6 1.0 C4B b:CLA3002 4.4 27.9 1.0 C3C a:CL0801 4.4 31.4 1.0 C3A a:CL0801 4.4 21.4 1.0 CBB b:CLA3002 4.4 22.0 1.0 C2A a:CL0801 4.4 31.2 1.0 CZ b:PHE617 4.6 38.1 1.0 C2B b:CLA3002 4.8 29.2 1.0 CBD a:CL0801 4.9 30.9 1.0

Magnesium binding site 2 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg802 b:54.0 occ:1.00 MG a:CLA802 0.0 54.0 1.0 NB a:CLA802 2.0 41.5 1.0 ND a:CLA802 2.0 45.1 1.0 NC a:CLA802 2.1 41.3 1.0 NA a:CLA802 2.1 46.9 1.0 C4D a:CLA802 2.9 40.1 1.0 C1B a:CLA802 3.0 40.0 1.0 C4B a:CLA802 3.0 38.8 1.0 C4A a:CLA802 3.0 39.3 1.0 C1C a:CLA802 3.1 36.7 1.0 C4C a:CLA802 3.1 45.2 1.0 C1D a:CLA802 3.1 40.8 1.0 C1A a:CLA802 3.2 44.5 1.0 CBB a:CLA803 3.3 43.3 1.0 CHB a:CLA802 3.4 44.1 1.0 CHC a:CLA802 3.4 40.9 1.0 CHA a:CLA802 3.5 44.6 1.0 CHD a:CLA802 3.5 42.1 1.0 CAB a:CLA803 4.2 50.9 1.0 C2B a:CLA802 4.2 40.3 1.0 C3B a:CLA802 4.2 37.9 1.0 C3D a:CLA802 4.2 37.1 1.0 C2C a:CLA802 4.3 38.1 1.0 C2D a:CLA802 4.3 44.0 1.0 C3C a:CLA802 4.4 41.9 1.0 C3A a:CLA802 4.4 32.5 1.0 CB a:ALA680 4.4 14.4 1.0 OD1 b:ASN582 4.4 51.6 1.0 C2A a:CLA802 4.5 33.2 1.0 CZ2 b:TRP586 4.8 23.9 1.0 CBD a:CLA802 4.9 30.3 1.0

Magnesium binding site 3 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg803 b:66.7 occ:1.00 MG a:CLA803 0.0 66.7 1.0 NB a:CLA803 2.0 38.4 1.0 ND a:CLA803 2.0 46.2 1.0 NA a:CLA803 2.1 47.6 1.0 NC a:CLA803 2.1 48.1 1.0 SD a:MET684 2.3 52.5 1.0 C4D a:CLA803 2.9 44.5 1.0 C1B a:CLA803 3.0 36.5 1.0 C4A a:CLA803 3.0 41.5 1.0 C4B a:CLA803 3.1 36.9 1.0 C1C a:CLA803 3.1 39.8 1.0 C4C a:CLA803 3.1 48.6 1.0 C1A a:CLA803 3.1 38.5 1.0 C1D a:CLA803 3.1 39.6 1.0 CG a:MET684 3.3 30.0 1.0 CHB a:CLA803 3.4 38.1 1.0 CHC a:CLA803 3.4 36.0 1.0 CHA a:CLA803 3.5 41.3 1.0 CHD a:CLA803 3.5 41.2 1.0 NE1 b:TRP579 3.7 36.5 1.0 CE a:MET684 4.0 47.1 1.0 CZ2 b:TRP579 4.2 39.5 1.0 C3D a:CLA803 4.3 44.7 1.0 C2B a:CLA803 4.3 45.9 1.0 CE2 b:TRP579 4.3 44.0 1.0 C3B a:CLA803 4.3 47.4 1.0 C2C a:CLA803 4.3 38.8 1.0 C2D a:CLA803 4.3 42.6 1.0 C3C a:CLA803 4.4 46.4 1.0 C3A a:CLA803 4.4 44.3 1.0 CB a:MET684 4.4 35.1 1.0 C2A a:CLA803 4.4 38.4 1.0 CD1 b:TRP579 4.8 36.5 1.0 CBD a:CLA803 4.9 39.1 1.0

Magnesium binding site 4 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg804 b:63.3 occ:1.00 MG a:CLA804 0.0 63.3 1.0 NE2 a:HIS52 1.9 65.2 1.0 NB a:CLA804 2.0 52.6 1.0 ND a:CLA804 2.0 49.1 1.0 NC a:CLA804 2.1 54.6 1.0 NA a:CLA804 2.1 60.1 1.0 CE1 a:HIS52 2.5 61.2 1.0 C4D a:CLA804 2.9 45.7 1.0 C1B a:CLA804 3.0 46.5 1.0 C4A a:CLA804 3.0 56.2 1.0 C4B a:CLA804 3.1 53.1 1.0 C1C a:CLA804 3.1 51.8 1.0 C4C a:CLA804 3.1 51.2 1.0 C1A a:CLA804 3.1 46.6 1.0 CD2 a:HIS52 3.2 61.0 1.0 C1D a:CLA804 3.2 50.6 1.0 CHB a:CLA804 3.4 49.5 1.0 CHC a:CLA804 3.4 51.9 1.0 CHA a:CLA804 3.5 38.9 1.0 CHD a:CLA804 3.5 49.4 1.0 CG j:PRO12 3.7 65.0 1.0 CB j:PRO12 3.7 60.6 1.0 ND1 a:HIS52 3.8 52.0 1.0 CG a:HIS52 4.1 50.8 1.0 C3D a:CLA804 4.3 51.3 1.0 C2B a:CLA804 4.3 52.3 1.0 C3B a:CLA804 4.3 51.8 1.0 C2C a:CLA804 4.3 54.0 1.0 C2D a:CLA804 4.4 51.3 1.0 C3C a:CLA804 4.4 55.7 1.0 C3A a:CLA804 4.4 60.4 1.0 C2A a:CLA804 4.4 51.3 1.0 CD j:PRO12 4.5 63.2 1.0 C27 j:BCR104 4.8 71.9 1.0 CBD a:CLA804 4.9 49.6 1.0

Magnesium binding site 5 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg805 b:55.7 occ:1.00 MG a:CLA805 0.0 55.7 1.0 NE2 a:HIS56 1.9 66.5 1.0 NB a:CLA805 2.0 51.3 1.0 ND a:CLA805 2.0 45.4 1.0 NA a:CLA805 2.1 45.3 1.0 NC a:CLA805 2.1 46.4 1.0 CE1 a:HIS56 2.5 63.5 1.0 C4D a:CLA805 2.9 45.0 1.0 C1B a:CLA805 3.0 50.0 1.0 C4A a:CLA805 3.0 44.6 1.0 C4B a:CLA805 3.1 45.1 1.0 C1C a:CLA805 3.1 51.5 1.0 C4C a:CLA805 3.1 42.9 1.0 C1D a:CLA805 3.1 47.9 1.0 C1A a:CLA805 3.2 47.2 1.0 CD2 a:HIS56 3.2 65.0 1.0 CHB a:CLA805 3.4 44.7 1.0 CHC a:CLA805 3.4 48.8 1.0 CHA a:CLA805 3.5 44.5 1.0 CHD a:CLA805 3.5 49.1 1.0 C8 a:CLA812 3.7 58.8 1.0 ND1 a:HIS56 3.7 47.4 1.0 C9 a:CLA812 3.9 57.5 1.0 CG a:HIS56 4.1 53.2 1.0 C3D a:CLA805 4.3 49.0 1.0 C2B a:CLA805 4.3 50.8 1.0 C3B a:CLA805 4.3 48.6 1.0 C2C a:CLA805 4.3 51.8 1.0 C2D a:CLA805 4.4 50.3 1.0 C3C a:CLA805 4.4 50.0 1.0 C3A a:CLA805 4.4 49.6 1.0 C2A a:CLA805 4.5 49.2 1.0 C10 a:CLA812 4.5 57.7 1.0 C7 a:CLA812 4.6 56.7 1.0 C6 a:CLA812 4.7 56.0 1.0 CBD a:CLA805 4.9 46.3 1.0

Magnesium binding site 6 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg806 b:51.1 occ:1.00 MG a:CLA806 0.0 51.1 1.0 NE2 a:HIS76 1.9 43.2 1.0 NB a:CLA806 2.0 39.1 1.0 ND a:CLA806 2.0 37.5 1.0 NA a:CLA806 2.1 39.4 1.0 NC a:CLA806 2.1 46.4 1.0 CD2 a:HIS76 2.8 34.4 1.0 CE1 a:HIS76 2.9 45.7 1.0 C4D a:CLA806 2.9 30.8 1.0 C1B a:CLA806 3.0 31.5 1.0 C4A a:CLA806 3.0 42.0 1.0 C4B a:CLA806 3.1 40.9 1.0 C1C a:CLA806 3.1 42.5 1.0 CMB a:CLA831 3.1 42.5 1.0 C4C a:CLA806 3.1 38.8 1.0 C1A a:CLA806 3.1 40.7 1.0 C1D a:CLA806 3.2 39.3 1.0 CHB a:CLA806 3.4 43.9 1.0 CHC a:CLA806 3.4 39.1 1.0 CHA a:CLA806 3.5 39.0 1.0 CHD a:CLA806 3.5 43.8 1.0 CG a:HIS76 3.9 23.3 1.0 ND1 a:HIS76 3.9 26.9 1.0 C3D a:CLA806 4.3 32.9 1.0 C2B a:CLA806 4.3 34.0 1.0 C3B a:CLA806 4.3 36.7 1.0 C2C a:CLA806 4.3 42.1 1.0 C3C a:CLA806 4.4 37.7 1.0 C2D a:CLA806 4.4 27.1 1.0 C3A a:CLA806 4.4 39.0 1.0 CG2 a:ILE72 4.4 41.0 1.0 C2A a:CLA806 4.4 34.3 1.0 C2B a:CLA831 4.5 44.5 1.0 CBB a:CLA831 4.8 47.8 1.0 CBD a:CLA806 4.9 34.8 1.0

Magnesium binding site 7 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg807 b:54.0 occ:1.00 MG a:CLA807 0.0 54.0 1.0 NE2 a:HIS79 1.9 53.5 1.0 NB a:CLA807 2.0 41.8 1.0 ND a:CLA807 2.0 39.2 1.0 NC a:CLA807 2.1 51.8 1.0 NA a:CLA807 2.1 40.0 1.0 CE1 a:HIS79 2.6 46.9 1.0 C4D a:CLA807 2.9 40.0 1.0 C1B a:CLA807 3.0 43.2 1.0 C4A a:CLA807 3.0 36.8 1.0 C4B a:CLA807 3.1 37.9 1.0 C1C a:CLA807 3.1 46.8 1.0 CD2 a:HIS79 3.1 45.9 1.0 C4C a:CLA807 3.1 46.1 1.0 C1A a:CLA807 3.1 38.0 1.0 C1D a:CLA807 3.1 40.7 1.0 CHB a:CLA807 3.4 42.3 1.0 CHC a:CLA807 3.4 40.3 1.0 CHA a:CLA807 3.5 43.0 1.0 CHD a:CLA807 3.5 43.2 1.0 ND1 a:HIS79 3.8 30.4 1.0 C16 a:CLA807 3.9 44.2 1.0 CG a:HIS79 4.1 33.4 1.0 C17 a:CLA807 4.2 44.3 1.0 C3D a:CLA807 4.2 37.9 1.0 C2B a:CLA807 4.3 43.6 1.0 C3B a:CLA807 4.3 41.0 1.0 C2C a:CLA807 4.3 49.7 1.0 C2D a:CLA807 4.4 41.1 1.0 C3C a:CLA807 4.4 49.8 1.0 C3A a:CLA807 4.4 37.7 1.0 C18 a:CLA807 4.4 44.2 1.0 C2A a:CLA807 4.4 32.4 1.0 C15 a:CLA807 4.7 44.0 1.0 CBD a:CLA807 4.9 46.1 1.0

Magnesium binding site 8 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg808 b:77.7 occ:1.00 MG a:CLA808 0.0 77.7 1.0 NE2 a:HIS93 1.9 58.8 1.0 NB a:CLA808 2.0 67.9 1.0 ND a:CLA808 2.0 60.0 1.0 NC a:CLA808 2.1 58.5 1.0 NA a:CLA808 2.1 61.8 1.0 CE1 a:HIS93 2.6 60.6 1.0 C4D a:CLA808 2.9 55.1 1.0 C1B a:CLA808 3.0 65.7 1.0 C4A a:CLA808 3.0 56.7 1.0 C4B a:CLA808 3.1 56.7 1.0 C1C a:CLA808 3.1 53.4 1.0 CD2 a:HIS93 3.1 50.4 1.0 C4C a:CLA808 3.1 60.5 1.0 C1D a:CLA808 3.2 55.9 1.0 C1A a:CLA808 3.2 59.4 1.0 CHB a:CLA808 3.4 61.0 1.0 CHC a:CLA808 3.4 51.8 1.0 CHA a:CLA808 3.5 54.1 1.0 CHD a:CLA808 3.5 56.4 1.0 C36 a:BCR849 3.6 67.0 1.0 C16 a:BCR849 3.8 71.7 1.0 ND1 a:HIS93 3.8 50.3 1.0 C18 a:BCR849 3.8 74.9 1.0 C17 a:BCR849 4.0 73.6 1.0 CG a:HIS93 4.1 47.5 1.0 O1A a:CLA808 4.2 75.0 1.0 C3D a:CLA808 4.3 55.4 1.0 C2B a:CLA808 4.3 60.5 1.0 C3B a:CLA808 4.3 60.9 1.0 C2C a:CLA808 4.3 53.7 1.0 C2D a:CLA808 4.4 55.1 1.0 C3C a:CLA808 4.4 62.3 1.0 C3A a:CLA808 4.4 56.8 1.0 C2A a:CLA808 4.5 64.3 1.0 C19 a:BCR849 4.8 72.9 1.0 C15 a:BCR849 4.8 69.3 1.0 CBD a:CLA808 4.9 58.1 1.0

Magnesium binding site 9 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg809 b:72.0 occ:1.00 MG a:CLA809 0.0 72.0 1.0 NB a:CLA809 2.0 49.3 1.0 ND a:CLA809 2.0 55.8 1.0 NA a:CLA809 2.1 51.5 1.0 NC a:CLA809 2.1 53.2 1.0 OE1 a:GLN115 2.2 53.3 1.0 C4D a:CLA809 2.9 45.5 1.0 C1B a:CLA809 3.0 49.1 1.0 C4A a:CLA809 3.0 51.5 1.0 C4B a:CLA809 3.1 46.2 1.0 C1C a:CLA809 3.1 46.3 1.0 CD a:GLN115 3.1 47.6 1.0 C1A a:CLA809 3.1 44.1 1.0 C4C a:CLA809 3.1 46.0 1.0 C1D a:CLA809 3.2 47.3 1.0 NE2 a:GLN115 3.3 46.5 1.0 CHB a:CLA809 3.4 49.4 1.0 CHC a:CLA809 3.4 48.6 1.0 CHA a:CLA809 3.5 44.0 1.0 CHD a:CLA809 3.5 45.5 1.0 C5 a:CLA829 4.0 44.1 1.0 C3D a:CLA809 4.2 42.0 1.0 C2B a:CLA809 4.3 43.5 1.0 C3B a:CLA809 4.3 44.6 1.0 C2C a:CLA809 4.3 42.9 1.0 C2D a:CLA809 4.4 44.2 1.0 C3C a:CLA809 4.4 44.1 1.0 C3A a:CLA809 4.4 50.8 1.0 C2A a:CLA809 4.4 45.9 1.0 C2 a:CLA829 4.5 39.5 1.0 CG a:GLN115 4.5 42.6 1.0 C3 a:CLA829 4.6 43.0 1.0 CBD a:CLA809 4.9 46.5 1.0

Magnesium binding site 10 out of 102 in the Rcii/Psi Complex, Class 2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Rcii/Psi Complex, Class 2 within 5.0Å range: probe atom residue distance (Å) B Occ a:Mg810 b:58.8 occ:1.00 MG a:CLA810 0.0 58.8 1.0 NB a:CLA810 2.0 46.9 1.0 ND a:CLA810 2.0 53.7 1.0 NC a:CLA810 2.1 47.9 1.0 NA a:CLA810 2.1 49.2 1.0 OE1 a:GLN123 2.2 58.2 1.0 C4D a:CLA810 2.9 45.9 1.0 C1B a:CLA810 3.0 48.2 1.0 C4A a:CLA810 3.0 48.8 1.0 C4B a:CLA810 3.1 49.6 1.0 C1C a:CLA810 3.1 47.1 1.0 C4C a:CLA810 3.1 49.3 1.0 C1D a:CLA810 3.1 50.6 1.0 C1A a:CLA810 3.2 48.3 1.0 CD a:GLN123 3.3 44.2 1.0 CHB a:CLA810 3.4 54.8 1.0 CHC a:CLA810 3.4 49.1 1.0 CHA a:CLA810 3.5 46.1 1.0 CHD a:CLA810 3.5 49.6 1.0 NE2 a:GLN123 3.8 45.7 1.0 C14 a:CLA829 4.2 43.0 1.0 C3D a:CLA810 4.3 42.4 1.0 C16 a:CLA829 4.3 40.9 1.0 C2B a:CLA810 4.3 50.0 1.0 C3B a:CLA810 4.3 53.5 1.0 C2C a:CLA810 4.3 48.1 1.0 C2D a:CLA810 4.3 45.5 1.0 C3C a:CLA810 4.4 52.4 1.0 C3A a:CLA810 4.4 47.7 1.0 C2A a:CLA810 4.5 49.7 1.0 CG a:GLN123 4.6 41.2 1.0 C15 a:CLA829 4.8 48.3 1.0 CB a:GLN123 4.8 45.9 1.0 CBD a:CLA810 4.9 44.5 1.0

Z.Zhao, I.Vercellino, J.Knoppova, R.Sobotka, J.W.Murray, P.J.Nixon, L.A.Sazanov, J.Komenda. The YCF48 Accessory Factor Occupies the Site of the Oxygen-Evolving Manganese Cluster During Photosystem II Biogenesis. Nat Commun V. 14 4681 2023.
ISSN: ESSN 2041-1723
PubMed: 37542031
DOI: 10.1038/S41467-023-40388-6