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Magnesium in PDB 8b55: Human ADGRG4 Ptx-Like Domain

Protein crystallography data

The structure of Human ADGRG4 Ptx-Like Domain, PDB code: 8b55 was solved by B.Kieslich, N.Straeter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.71 / 1.36
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.117, 40.243, 54.912, 90, 113.9, 90
R / Rfree (%) 15.4 / 18.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human ADGRG4 Ptx-Like Domain (pdb code 8b55). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human ADGRG4 Ptx-Like Domain, PDB code: 8b55:

Magnesium binding site 1 out of 1 in 8b55

Go back to Magnesium Binding Sites List in 8b55
Magnesium binding site 1 out of 1 in the Human ADGRG4 Ptx-Like Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human ADGRG4 Ptx-Like Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:27.2
occ:0.59
OD2 A:ASP202 2.0 31.5 1.0
O A:HOH443 2.0 36.2 1.0
O A:HOH410 2.1 35.3 1.0
CG A:ASP202 3.0 26.3 1.0
OD1 A:ASP202 3.3 28.0 1.0
O A:HOH456 4.0 43.0 1.0
OE2 A:GLU209 4.2 52.3 1.0
CB A:ASP202 4.3 23.0 1.0
HB2 A:ASP202 4.3 27.6 1.0
OE1 A:GLU209 4.4 54.7 1.0
H A:ASP202 4.4 26.9 1.0
O A:HOH481 4.5 54.9 1.0
O A:CYS200 4.5 30.3 1.0
O A:HOH412 4.6 41.1 1.0
CD A:GLU209 4.6 49.3 1.0
HH A:TYR184 4.6 36.6 1.0
N A:ASP202 4.8 22.4 1.0
HA A:LEU201 4.8 26.9 1.0
HB3 A:ASP202 4.9 27.6 1.0

Reference:

B.Kieslich, N.Straeter. Human ADGRG4 Ptx-Like Domain To Be Published.
Page generated: Thu Oct 3 19:10:58 2024

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