Atomistry » Magnesium » PDB 8b2i-8beo » 8bd4
Atomistry »
  Magnesium »
    PDB 8b2i-8beo »
      8bd4 »

Magnesium in PDB 8bd4: Tniq-Capped Tns-Atp-Dsdna Complex

Other elements in 8bd4:

The structure of Tniq-Capped Tns-Atp-Dsdna Complex also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Tniq-Capped Tns-Atp-Dsdna Complex (pdb code 8bd4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Tniq-Capped Tns-Atp-Dsdna Complex, PDB code: 8bd4:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 8bd4

Go back to Magnesium Binding Sites List in 8bd4
Magnesium binding site 1 out of 7 in the Tniq-Capped Tns-Atp-Dsdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tniq-Capped Tns-Atp-Dsdna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:283.6
occ:1.00
 O1G A:ATP301 2.1 291.4 1.0
O1B A:ATP301 2.1 292.4 1.0
PG A:ATP301 2.4 291.3 1.0
OG1 A:THR67 2.4 293.2 1.0
O2G A:ATP301 2.4 291.1 1.0
O3B A:ATP301 2.7 291.8 1.0
PB A:ATP301 2.8 292.6 1.0
O3A A:ATP301 3.5 291.8 1.0
CB A:THR67 3.6 293.0 1.0
O2A A:ATP301 3.9 292.3 1.0
O3G A:ATP301 3.9 291.0 1.0
O2B A:ATP301 4.2 291.9 1.0
PA A:ATP301 4.2 292.8 1.0
N A:THR67 4.3 293.1 1.0
NH2 B:ARG189 4.3 263.8 1.0
OD1 A:ASP144 4.5 258.2 1.0
CA A:THR67 4.5 293.0 1.0
CG2 A:THR67 4.6 292.9 1.0
O1A A:ATP301 4.7 292.5 1.0
CE A:LYS66 5.0 284.6 1.0

Magnesium binding site 2 out of 7 in 8bd4

Go back to Magnesium Binding Sites List in 8bd4
Magnesium binding site 2 out of 7 in the Tniq-Capped Tns-Atp-Dsdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tniq-Capped Tns-Atp-Dsdna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg302

b:283.6
occ:1.00
 O1G B:ATP301 2.1 291.4 1.0
O1B B:ATP301 2.1 292.4 1.0
PG B:ATP301 2.4 291.3 1.0
OG1 B:THR67 2.4 293.2 1.0
O2G B:ATP301 2.4 291.1 1.0
O3B B:ATP301 2.7 291.8 1.0
PB B:ATP301 2.8 292.6 1.0
O3A B:ATP301 3.5 291.8 1.0
CB B:THR67 3.6 293.0 1.0
O2A B:ATP301 3.9 292.3 1.0
O3G B:ATP301 3.9 291.0 1.0
O2B B:ATP301 4.2 291.9 1.0
PA B:ATP301 4.2 292.8 1.0
N B:THR67 4.3 293.1 1.0
NH2 C:ARG189 4.3 263.8 1.0
OD1 B:ASP144 4.5 258.2 1.0
CA B:THR67 4.5 293.0 1.0
CG2 B:THR67 4.6 292.9 1.0
O1A B:ATP301 4.7 292.5 1.0
CE B:LYS66 5.0 284.6 1.0

Magnesium binding site 3 out of 7 in 8bd4

Go back to Magnesium Binding Sites List in 8bd4
Magnesium binding site 3 out of 7 in the Tniq-Capped Tns-Atp-Dsdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tniq-Capped Tns-Atp-Dsdna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg302

b:283.6
occ:1.00
 O1G C:ATP301 2.1 291.4 1.0
O1B C:ATP301 2.1 292.4 1.0
PG C:ATP301 2.4 291.3 1.0
OG1 C:THR67 2.4 293.2 1.0
O2G C:ATP301 2.4 291.1 1.0
O3B C:ATP301 2.7 291.8 1.0
PB C:ATP301 2.8 292.6 1.0
O3A C:ATP301 3.5 291.8 1.0
CB C:THR67 3.6 293.0 1.0
O2A C:ATP301 3.9 292.3 1.0
O3G C:ATP301 3.9 291.0 1.0
O2B C:ATP301 4.2 291.9 1.0
PA C:ATP301 4.2 292.8 1.0
N C:THR67 4.3 293.1 1.0
NH2 D:ARG189 4.4 263.8 1.0
OD1 C:ASP144 4.5 258.2 1.0
CA C:THR67 4.5 293.0 1.0
CG2 C:THR67 4.6 292.9 1.0
O1A C:ATP301 4.7 292.5 1.0
CE C:LYS66 5.0 284.6 1.0

Magnesium binding site 4 out of 7 in 8bd4

Go back to Magnesium Binding Sites List in 8bd4
Magnesium binding site 4 out of 7 in the Tniq-Capped Tns-Atp-Dsdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tniq-Capped Tns-Atp-Dsdna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg302

b:283.6
occ:1.00
 O1G D:ATP301 2.1 291.4 1.0
O1B D:ATP301 2.1 292.4 1.0
PG D:ATP301 2.4 291.3 1.0
OG1 D:THR67 2.4 293.2 1.0
O2G D:ATP301 2.4 291.1 1.0
O3B D:ATP301 2.7 291.8 1.0
PB D:ATP301 2.8 292.6 1.0
O3A D:ATP301 3.5 291.8 1.0
CB D:THR67 3.6 293.0 1.0
O2A D:ATP301 3.9 292.3 1.0
O3G D:ATP301 3.9 291.0 1.0
O2B D:ATP301 4.2 291.9 1.0
PA D:ATP301 4.2 292.8 1.0
N D:THR67 4.3 293.1 1.0
NH2 E:ARG189 4.4 263.8 1.0
OD1 D:ASP144 4.5 258.2 1.0
CA D:THR67 4.5 293.0 1.0
CG2 D:THR67 4.6 292.9 1.0
O1A D:ATP301 4.7 292.5 1.0
CE D:LYS66 5.0 284.6 1.0

Magnesium binding site 5 out of 7 in 8bd4

Go back to Magnesium Binding Sites List in 8bd4
Magnesium binding site 5 out of 7 in the Tniq-Capped Tns-Atp-Dsdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Tniq-Capped Tns-Atp-Dsdna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg302

b:283.6
occ:1.00
 O1G E:ATP301 2.1 291.4 1.0
O1B E:ATP301 2.1 292.4 1.0
PG E:ATP301 2.4 291.3 1.0
OG1 E:THR67 2.4 293.2 1.0
O2G E:ATP301 2.4 291.1 1.0
O3B E:ATP301 2.7 291.8 1.0
PB E:ATP301 2.8 292.6 1.0
O3A E:ATP301 3.5 291.8 1.0
CB E:THR67 3.6 293.0 1.0
O2A E:ATP301 3.9 292.3 1.0
O3G E:ATP301 3.9 291.0 1.0
O2B E:ATP301 4.2 291.9 1.0
PA E:ATP301 4.2 292.8 1.0
N E:THR67 4.3 293.1 1.0
NH2 F:ARG189 4.3 263.8 1.0
OD1 E:ASP144 4.5 258.2 1.0
CA E:THR67 4.5 293.0 1.0
CG2 E:THR67 4.6 292.9 1.0
O1A E:ATP301 4.7 292.5 1.0
CE E:LYS66 5.0 284.6 1.0

Magnesium binding site 6 out of 7 in 8bd4

Go back to Magnesium Binding Sites List in 8bd4
Magnesium binding site 6 out of 7 in the Tniq-Capped Tns-Atp-Dsdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Tniq-Capped Tns-Atp-Dsdna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg302

b:283.6
occ:1.00
 O1G F:ATP301 2.1 291.4 1.0
O1B F:ATP301 2.1 292.4 1.0
PG F:ATP301 2.4 291.3 1.0
OG1 F:THR67 2.4 293.2 1.0
O2G F:ATP301 2.4 291.1 1.0
O3B F:ATP301 2.7 291.8 1.0
PB F:ATP301 2.8 292.6 1.0
O3A F:ATP301 3.5 291.8 1.0
CB F:THR67 3.6 293.0 1.0
O2A F:ATP301 3.9 292.3 1.0
O3G F:ATP301 3.9 291.0 1.0
NH2 G:ARG189 4.2 263.8 1.0
O2B F:ATP301 4.2 291.9 1.0
PA F:ATP301 4.2 292.8 1.0
N F:THR67 4.3 293.1 1.0
OD1 F:ASP144 4.5 258.2 1.0
CA F:THR67 4.5 293.0 1.0
CG2 F:THR67 4.6 292.9 1.0
O1A F:ATP301 4.7 292.5 1.0
CE F:LYS66 5.0 284.6 1.0

Magnesium binding site 7 out of 7 in 8bd4

Go back to Magnesium Binding Sites List in 8bd4
Magnesium binding site 7 out of 7 in the Tniq-Capped Tns-Atp-Dsdna Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Tniq-Capped Tns-Atp-Dsdna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg302

b:283.6
occ:1.00
 O1G G:ATP301 2.1 291.4 1.0
O1B G:ATP301 2.1 292.4 1.0
PG G:ATP301 2.4 291.3 1.0
OG1 G:THR67 2.4 293.2 1.0
O2G G:ATP301 2.4 291.1 1.0
O3B G:ATP301 2.7 291.8 1.0
PB G:ATP301 2.8 292.6 1.0
O3A G:ATP301 3.5 291.8 1.0
CB G:THR67 3.6 293.0 1.0
O2A G:ATP301 3.9 292.3 1.0
O3G G:ATP301 3.9 291.0 1.0
O2B G:ATP301 4.2 291.9 1.0
PA G:ATP301 4.2 292.8 1.0
N G:THR67 4.3 293.1 1.0
OD1 G:ASP144 4.5 258.2 1.0
CA G:THR67 4.5 293.0 1.0
CG2 G:THR67 4.6 292.9 1.0
O1A G:ATP301 4.7 292.5 1.0
CE G:LYS66 5.0 284.6 1.0

Reference:

M.Schmitz, I.Querques, S.Oberli, C.Chanez, M.Jinek. Structural Basis For the Assembly of the Type V Crispr-Associated Transposon Complex. Cell V. 185 4999 2022.
ISSN: ISSN 1097-4172
PubMed: 36435179
DOI: 10.1016/J.CELL.2022.11.009
Page generated: Thu Oct 3 19:15:22 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy