Atomistry » Magnesium » PDB 8c7c-8cgk » 8caz
Atomistry »
  Magnesium »
    PDB 8c7c-8cgk »
      8caz »

Magnesium in PDB 8caz: Empty 30S Head

Other elements in 8caz:

The structure of Empty 30S Head also contains other interesting chemical elements:

Potassium (K) 13 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Magnesium atom in the Empty 30S Head (pdb code 8caz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 29 binding sites of Magnesium where determined in the Empty 30S Head, PDB code: 8caz:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 1 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1608

b:29.0
occ:1.00
O A:HOH1789 2.0 30.8 1.0
O A:HOH1919 2.0 29.4 1.0
O A:HOH1858 2.1 27.7 1.0
OP1 A:G944 2.1 25.1 1.0
O A:HOH2154 2.1 30.4 1.0
OP2 A:G945 2.1 27.5 1.0
P A:G944 3.2 22.3 1.0
P A:G945 3.5 26.0 1.0
OP2 A:G944 3.6 26.3 1.0
O5' A:G944 3.9 25.1 1.0
O A:HOH1995 3.9 42.7 1.0
N7 A:A946 4.1 23.8 1.0
O A:HOH2105 4.1 38.0 1.0
O5' A:G945 4.2 28.2 1.0
C5' A:G944 4.2 25.4 1.0
OP1 A:G945 4.3 32.4 1.0
K A:K1607 4.3 40.4 1.0
OP2 A:A946 4.5 28.1 1.0
O3' A:U943 4.6 23.3 1.0
O3' A:G944 4.7 25.8 1.0
O A:HOH2101 4.7 29.3 1.0
C8 A:A946 4.8 23.7 1.0
O A:HOH1760 4.8 24.8 1.0
O6 A:G947 4.9 21.2 1.0
C3' A:G944 4.9 25.6 1.0
O6 A:G1233 5.0 22.2 1.0

Magnesium binding site 2 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 2 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1609

b:21.8
occ:1.00
OP1 A:U1224 2.0 20.7 1.0
O A:HOH2196 2.0 23.2 1.0
O A:HOH1729 2.0 23.2 1.0
O A:HOH1840 2.1 22.0 1.0
O A:HOH2013 2.1 21.4 1.0
O A:HOH1861 2.1 22.6 1.0
P A:U1224 3.3 19.1 1.0
OP2 A:U1224 3.8 22.5 1.0
O A:HOH1782 3.8 38.2 1.0
O2' A:C1223 4.2 18.0 1.0
OP1 A:G951 4.2 24.8 1.0
O3' A:C1223 4.2 18.5 1.0
N6 A:A977 4.3 23.6 1.0
O5' A:U1224 4.3 20.5 1.0
N7 A:A977 4.3 21.4 1.0
OP2 A:U952 4.4 21.1 1.0
C2' A:C1223 4.4 17.6 1.0
O A:HOH2003 4.5 30.3 1.0
O A:HOH2158 4.6 31.7 1.0
O A:HOH2140 4.7 43.2 1.0
C3' A:C1223 4.8 17.5 1.0
OP1 A:U952 4.9 22.6 1.0
C2 A:A974 5.0 25.2 1.0

Magnesium binding site 3 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 3 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1610

b:19.5
occ:1.00
OP1 A:C980 1.9 18.4 1.0
O A:HOH2049 1.9 20.2 1.0
O A:HOH2070 1.9 21.3 1.0
O A:HOH1990 2.1 20.9 1.0
O A:HOH2104 2.1 22.4 1.0
O A:HOH1776 2.1 19.6 1.0
P A:C980 3.3 15.8 1.0
O3' A:C979 3.8 17.6 1.0
O A:HOH1731 3.8 33.4 1.0
O A:HOH2093 4.1 21.5 1.0
O6 A:G1220 4.1 18.0 1.0
O5' A:C980 4.2 18.2 1.0
O A:HOH2190 4.2 32.0 1.0
O A:HOH2038 4.2 38.9 1.0
C5' A:C980 4.3 18.8 1.0
N7 A:G1220 4.3 18.6 1.0
OP2 A:C980 4.4 16.4 1.0
N7 A:A1219 4.5 22.9 1.0
O A:HOH1886 4.5 22.4 1.0
O A:HOH1870 4.6 14.3 1.0
OP2 A:A1219 4.6 28.0 1.0
O6 A:G1221 4.6 17.4 1.0
C6 A:G1220 4.9 18.2 1.0
C5 A:G1220 5.0 17.9 1.0

Magnesium binding site 4 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 4 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1611

b:24.8
occ:1.00
OP2 A:A1110 2.0 27.3 1.0
O A:HOH1952 2.0 23.6 1.0
O A:HOH2184 2.1 25.4 1.0
O A:HOH1753 2.1 23.4 1.0
O A:HOH1847 2.1 25.4 1.0
O A:HOH1784 2.1 23.9 1.0
P A:A1110 3.3 26.1 1.0
O5' A:A1110 3.6 28.7 1.0
O2 A:U1189 3.7 35.6 1.0
O A:HOH2000 4.0 30.2 1.0
OP1 A:A1110 4.0 31.0 1.0
N7 A:A1111 4.1 34.8 1.0
OP1 A:C1109 4.1 28.5 1.0
OP2 A:C1109 4.1 25.6 1.0
N7 A:A1110 4.2 28.8 1.0
C8 A:A1110 4.2 28.5 1.0
O A:HOH1821 4.4 31.4 1.0
O3' A:C1109 4.5 30.1 1.0
P A:C1109 4.5 24.5 1.0
OP2 A:A1111 4.5 36.9 1.0
N6 A:A1111 4.6 37.3 1.0
C3' A:C1109 4.8 28.4 1.0
C2 A:U1189 4.8 32.3 1.0
O5' A:C1109 4.8 26.6 1.0

Magnesium binding site 5 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 5 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1612

b:27.0
occ:1.00
O6 A:G1108 1.9 25.1 1.0
OP2 A:U1095 2.0 28.5 1.0
O A:HOH2164 2.0 29.4 1.0
O A:HOH2015 2.0 28.6 1.0
O A:HOH1786 2.1 26.7 1.0
O A:HOH1756 2.1 27.6 1.0
C6 A:G1108 2.9 22.9 1.0
N1 A:G1108 3.3 22.7 1.0
P A:U1095 3.4 27.0 1.0
O A:HOH2169 4.1 41.5 1.0
C5 A:G1108 4.2 22.2 1.0
O3' A:G1094 4.2 29.6 1.0
O5' A:U1095 4.2 28.5 1.0
O2' A:G1094 4.3 32.0 1.0
OP1 A:U1095 4.4 27.9 1.0
OP2 A:C1096 4.4 38.7 1.0
C5' A:U1095 4.4 30.0 1.0
N3 A:C1109 4.4 30.1 1.0
C2 A:C1109 4.6 30.6 1.0
C2 A:G1108 4.6 22.9 1.0
O A:HOH1916 4.7 35.0 1.0
C4 A:C1109 4.8 29.7 1.0
O A:HOH2063 4.8 42.6 1.0
N4 A:C1107 4.9 20.7 1.0
N7 A:G1108 4.9 22.8 1.0
O2 A:C1109 4.9 33.0 1.0
O6 A:G1068 4.9 22.0 1.0

Magnesium binding site 6 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 6 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1613

b:30.0
occ:1.00
OP1 A:G1094 1.9 30.0 1.0
O A:HOH1908 2.0 33.2 1.0
OP1 A:G1068 2.0 28.6 1.0
O A:HOH2100 2.1 28.1 1.0
O A:HOH1845 2.1 31.8 1.0
O A:HOH1770 2.1 33.1 1.0
P A:G1068 3.3 24.4 1.0
P A:G1094 3.3 27.1 1.0
OP2 A:G1068 3.7 26.7 1.0
O2' A:G1387 3.8 34.0 1.0
OP2 A:G1094 3.9 28.8 1.0
O3' A:A1067 4.0 26.8 1.0
C3' A:A1067 4.1 26.8 1.0
O5' A:G1094 4.1 28.8 1.0
C5' A:G1094 4.2 29.5 1.0
O4' A:C1388 4.4 34.8 1.0
O3' A:A1093 4.4 31.1 1.0
O5' A:G1068 4.5 26.5 1.0
C4' A:A1067 4.8 29.0 1.0
C4' A:C1388 4.8 34.0 1.0
C2' A:G1387 5.0 33.1 1.0
C5' A:A1067 5.0 31.4 1.0

Magnesium binding site 7 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 7 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1614

b:33.5
occ:1.00
OP2 A:C1069 2.0 28.4 1.0
O A:HOH1853 2.0 36.9 1.0
O A:HOH1849 2.0 31.8 1.0
O A:HOH1788 2.1 29.0 1.0
O A:HOH1979 2.4 38.4 1.0
P A:C1069 3.4 27.0 1.0
O2 A:U1085 4.0 27.9 1.0
O5' A:C1069 4.1 27.8 1.0
OP1 A:C1069 4.1 32.5 1.0
O6 A:G1094 4.2 31.0 1.0
N7 A:G1094 4.3 29.9 1.0
O A:HOH2136 4.3 34.8 1.0
O3' A:G1068 4.5 27.6 1.0
C3' A:G1068 4.7 25.9 1.0
C5' A:G1068 4.9 25.8 1.0
OP1 A:C1388 4.9 35.4 1.0
C6 A:G1094 5.0 30.6 1.0

Magnesium binding site 8 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 8 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1615

b:33.2
occ:1.00
OP1 A:C934 2.0 32.1 1.0
O A:HOH1712 2.0 33.1 1.0
O A:HOH2145 2.1 34.8 1.0
O A:HOH2135 2.1 33.5 1.0
O A:HOH1791 2.1 32.5 1.0
O A:HOH1829 2.1 30.4 1.0
P A:C934 3.4 33.3 1.0
OP2 A:U1345 4.1 28.2 1.0
O A:HOH2020 4.2 25.7 1.0
O5' A:C934 4.2 32.2 1.0
OP2 A:C934 4.2 35.0 1.0
C5' A:C934 4.2 32.8 1.0
OP1 A:U1345 4.3 26.1 1.0
O2' A:U1345 4.4 27.4 1.0
O3' A:G933 4.4 34.7 1.0
C2' A:U1345 4.6 26.7 1.0
P A:U1345 4.7 24.0 1.0

Magnesium binding site 9 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 9 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1616

b:30.0
occ:1.00
O A:HOH1701 2.1 27.6 1.0
OP2 A:A937 2.1 32.3 1.0
O A:HOH2024 2.1 29.3 1.0
O A:HOH1855 2.1 28.7 1.0
O A:HOH1942 2.1 28.0 1.0
P A:A937 3.2 33.5 1.0
O5' A:A937 3.4 31.7 1.0
N7 A:A938 3.6 28.8 1.0
OP1 A:A937 3.9 38.5 1.0
C8 A:A937 4.0 28.4 1.0
N7 A:A937 4.1 27.0 1.0
OP2 A:A938 4.2 35.3 1.0
N6 A:A938 4.3 24.9 1.0
N7 A:G939 4.4 26.5 1.0
O3' A:C936 4.5 34.5 1.0
C8 A:A938 4.5 28.0 1.0
C5 A:A938 4.6 27.5 1.0
O6 A:G939 4.7 26.5 1.0
C5' A:A937 4.7 31.7 1.0
C3' A:C936 4.8 34.0 1.0
C3' A:A937 4.9 35.3 1.0
O A:HOH1809 4.9 33.1 1.0
C6 A:A938 4.9 26.6 1.0

Magnesium binding site 10 out of 29 in 8caz

Go back to Magnesium Binding Sites List in 8caz
Magnesium binding site 10 out of 29 in the Empty 30S Head


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Empty 30S Head within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1617

b:42.6
occ:1.00
O A:HOH2194 2.1 39.7 1.0
O A:HOH2066 2.4 31.8 1.0
O A:HOH2061 2.4 34.1 1.0
O A:HOH2132 2.5 34.7 1.0
N7 A:G1279 3.6 25.5 1.0
O A:HOH2026 3.8 38.2 1.0
N7 A:A1254 3.8 26.4 1.0
C8 A:G1279 3.9 24.9 1.0
N7 A:G1255 4.1 27.1 1.0
O6 A:G1255 4.2 25.9 1.0
N6 A:A1254 4.4 24.9 1.0
C5 A:A1254 4.5 25.3 1.0
C5 A:G1279 4.5 24.5 1.0
OP2 A:A1254 4.6 30.4 1.0
C8 A:A1254 4.6 25.9 1.0
O A:HOH1972 4.7 37.8 1.0
C6 A:A1254 4.8 23.5 1.0
N9 A:G1279 4.9 25.3 1.0
C5 A:G1255 5.0 25.4 1.0
C6 A:G1255 5.0 24.3 1.0

Reference:

H.Paternoga, C.Crowe-Mcauliffe, L.V.Bock, T.O.Koller, M.Morici, B.Beckert, A.G.Myasnikov, H.Grubmueller, J.Novacek, D.N.Wilson. Structural Conservation of Antibiotic Interaction with Ribosomes To Be Published.
Page generated: Thu Oct 3 20:31:37 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy