Atomistry » Magnesium » PDB 8gi3-8gwe » 8gt3
Atomistry »
  Magnesium »
    PDB 8gi3-8gwe »
      8gt3 »

Magnesium in PDB 8gt3: Crystal Structure of Human Cardiac Alpha Actin P109A Mutant (Adp-Pi State) in Complex with Fragmin F1 Domain

Protein crystallography data

The structure of Crystal Structure of Human Cardiac Alpha Actin P109A Mutant (Adp-Pi State) in Complex with Fragmin F1 Domain, PDB code: 8gt3 was solved by M.Iwasa, T.Oda, S.Takeda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.55 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.171, 91.108, 115.142, 90, 90, 90
R / Rfree (%) 16.5 / 19.6

Other elements in 8gt3:

The structure of Crystal Structure of Human Cardiac Alpha Actin P109A Mutant (Adp-Pi State) in Complex with Fragmin F1 Domain also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Human Cardiac Alpha Actin P109A Mutant (Adp-Pi State) in Complex with Fragmin F1 Domain (pdb code 8gt3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Cardiac Alpha Actin P109A Mutant (Adp-Pi State) in Complex with Fragmin F1 Domain, PDB code: 8gt3:

Magnesium binding site 1 out of 1 in 8gt3

Go back to Magnesium Binding Sites List in 8gt3
Magnesium binding site 1 out of 1 in the Crystal Structure of Human Cardiac Alpha Actin P109A Mutant (Adp-Pi State) in Complex with Fragmin F1 Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Cardiac Alpha Actin P109A Mutant (Adp-Pi State) in Complex with Fragmin F1 Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:13.7
occ:1.00
O A:HOH560 2.0 15.5 1.0
O A:HOH703 2.1 13.9 1.0
O A:HOH550 2.1 14.6 1.0
O A:HOH654 2.1 14.9 1.0
O1B A:ADP401 2.1 16.3 1.0
O1 A:PO4402 2.2 15.4 1.0
PB A:ADP401 3.4 19.0 1.0
O A:HOH611 3.5 15.4 1.0
P A:PO4402 3.6 16.3 1.0
O3B A:ADP401 3.7 18.5 1.0
O4 A:PO4402 3.9 16.0 1.0
O A:HOH645 4.0 16.7 1.0
O3A A:ADP401 4.1 18.6 1.0
O2A A:ADP401 4.1 12.5 1.0
OE1 A:GLN137 4.2 15.7 1.0
NZ A:LYS18 4.2 17.4 1.0
CA A:GLY13 4.2 12.7 1.0
OD2 A:ASP154 4.3 16.4 1.0
OD2 A:ASP11 4.3 12.6 1.0
OD1 A:ASP11 4.4 14.0 1.0
O A:HOH628 4.4 15.7 1.0
O3 A:PO4402 4.5 16.2 1.0
O2 A:PO4402 4.5 15.6 1.0
CD A:GLN137 4.5 14.6 1.0
CA A:GLY156 4.5 10.1 1.0
O2B A:ADP401 4.6 17.3 1.0
PA A:ADP401 4.6 15.4 1.0
NE2 A:GLN137 4.7 13.6 1.0
CG A:ASP11 4.8 13.5 1.0

Reference:

M.Iwasa, S.Takeda, A.Narita, Y.Maeda, T.Oda. Mutagenic Analysis of Actin Reveals the Mechanism of HIS161 Flipping That Triggers Atp Hydrolysis Front Cell Dev Biol 2023.
ISSN: ESSN 2296-634X
DOI: 10.3389/FCELL.2023.1105460
Page generated: Fri Oct 4 03:58:06 2024

Last articles

Cl in 4BAT
Cl in 4BAD
Cl in 4BAE
Cl in 4B9B
Cl in 4B95
Cl in 4B9D
Cl in 4B98
Cl in 4B96
Cl in 4B8E
Cl in 4B7B
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy