Magnesium in PDB 8h0v: Rna Polymerase II Transcribing A Chromatosome (Type I)

All present enzymatic activity of Rna Polymerase II Transcribing A Chromatosome (Type I):
2.7.7.6;

The structure of Rna Polymerase II Transcribing A Chromatosome (Type I) also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

The binding sites of Magnesium atom in the Rna Polymerase II Transcribing A Chromatosome (Type I) (pdb code 8h0v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase II Transcribing A Chromatosome (Type I), PDB code: 8h0v:

Magnesium binding site 1 out of 1 in the Rna Polymerase II Transcribing A Chromatosome (Type I)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase II Transcribing A Chromatosome (Type I) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1803 b:200.4 occ:1.00 OD2 A:ASP486 2.2 188.3 1.0 OD1 A:ASP482 2.3 185.8 1.0 O3' P:U10 2.3 200.4 1.0 OD1 A:ASP484 2.4 176.1 1.0 OP1 P:U11 2.7 192.9 1.0 CG A:ASP486 2.9 188.3 1.0 P P:U11 3.1 192.9 1.0 OD1 A:ASP486 3.1 188.3 1.0 CG A:ASP482 3.4 185.8 1.0 C3' P:U10 3.4 200.4 1.0 O2' P:U10 3.5 200.4 1.0 CG A:ASP484 3.5 176.1 1.0 OD2 A:ASP482 3.8 185.8 1.0 C4' P:U10 3.9 200.4 1.0 OD2 A:ASP484 3.9 176.1 1.0 C2' P:U10 4.0 200.4 1.0 O5' P:U11 4.1 192.9 1.0 OP2 P:U11 4.1 192.9 1.0 CB A:ASP486 4.2 188.3 1.0 O A:ASP482 4.4 185.8 1.0 N A:ASP482 4.5 185.8 1.0 N A:ASP486 4.5 188.3 1.0 CB A:ASP482 4.6 185.8 1.0 C5' P:U10 4.6 200.4 1.0 C A:ASP482 4.6 185.8 1.0 N A:ASP484 4.7 176.1 1.0 CA A:ASP486 4.7 188.3 1.0 C5' P:U11 4.7 192.9 1.0 CA A:ASP482 4.8 185.8 1.0 C A:ASP484 4.8 176.1 1.0 CB A:ASP484 4.8 176.1 1.0 O A:ASP484 4.9 176.1 1.0

R.Hirano, H.Ehara, T.Kujirai, T.Uejima, Y.Takizawa, S.I.Sekine, H.Kurumizaka. Structural Basis of Rna Polymerase II Transcription on the Chromatosome Containing Linker Histone H1. Nat Commun V. 13 7287 2022.
ISSN: ESSN 2041-1723
PubMed: 36435862
DOI: 10.1038/S41467-022-35003-Z