Magnesium in PDB 8h5m: Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis

Enzymatic activity of Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis

All present enzymatic activity of Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis:
3.1.1.101;

Protein crystallography data

The structure of Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis, PDB code: 8h5m was solved by S.H.Lee, H.Seo, K.-J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	28.23 / 1.89
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	50.677, 67.795, 78.471, 90, 90, 90
*R / R_free (%)*	15.1 / 18.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis (pdb code 8h5m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis, PDB code: 8h5m:

Magnesium binding site 1 out of 1 in 8h5m

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Magnesium Binding Sites List in 8h5m

Magnesium binding site 1 out of 1 in the Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Petase S121E/D186H/N233C/S242T/N246D/S282C Mutant From Ideonella Sakaiensis within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg401 b:6.3 occ:1.00	OG	A:SER160	2.9	11.1	1.0
	O	A:HOH536	3.1	14.2	1.0
	N	A:TYR87	3.1	11.7	1.0
	N	A:MET161	3.3	10.6	1.0
	CB	A:SER160	3.3	11.1	1.0
	CB	A:TYR87	3.5	14.1	1.0
	CG	A:MET161	3.5	17.0	1.0
	CB	A:MET161	3.6	13.2	1.0
	CA	A:GLY86	3.9	10.2	1.0
	CA	A:TYR87	3.9	13.2	1.0
	C	A:GLY86	4.0	10.7	1.0
	CA	A:MET161	4.0	11.7	1.0
	O	A:HOH552	4.1	28.3	1.0
	SD	A:MET161	4.2	23.0	1.0
	C	A:SER160	4.3	10.7	1.0
	CA	A:SER160	4.4	11.0	1.0
	O	A:TYR87	4.6	13.6	1.0
	CE	A:MET161	4.8	24.6	1.0
	CG	A:TYR87	4.8	14.6	1.0
	C	A:TYR87	4.8	12.2	1.0
	NE2	A:HIS237	4.8	11.0	1.0
	O	A:TRP159	5.0	9.7	1.0

Reference:

S.H.Lee, H.Seo, K.J.Kim. A Case of Balance Engineering Exhibits Kinetic Relationship Between Mesophilic and Thermophilic Poly(Ethylene Terephthalate) Depolymerases. To Be Published.

Page generated: Fri Aug 15 06:07:32 2025

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