Magnesium in PDB 8h9v: Human Atp Synthase State 3B (Combined)

All present enzymatic activity of Human Atp Synthase State 3B (Combined):
7.1.2.2;

The binding sites of Magnesium atom in the Human Atp Synthase State 3B (Combined) (pdb code 8h9v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Human Atp Synthase State 3B (Combined), PDB code: 8h9v:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Human Atp Synthase State 3B (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Atp Synthase State 3B (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:70.0 occ:1.00 OG1 A:THR176 2.9 61.1 1.0 OD1 A:ASP269 2.9 52.6 1.0 O3G A:ATP601 2.9 81.4 1.0 O2G A:ATP601 3.2 81.4 1.0 O1B A:ATP601 3.3 81.4 1.0 OD2 A:ASP269 3.4 52.6 1.0 CG A:ASP269 3.5 52.6 1.0 PG A:ATP601 3.6 81.4 1.0 NE2 A:GLN208 4.1 56.3 1.0 CB A:THR176 4.3 61.1 1.0 PB A:ATP601 4.4 81.4 1.0 O3B A:ATP601 4.5 81.4 1.0 CD A:GLN208 4.6 56.3 1.0 O2B A:ATP601 4.7 81.4 1.0 CE A:LYS175 4.8 59.8 1.0 O1G A:ATP601 4.8 81.4 1.0 N A:THR176 4.8 61.1 1.0 CB A:ASP269 5.0 52.6 1.0 CG A:GLN208 5.0 56.3 1.0

Magnesium binding site 2 out of 5 in the Human Atp Synthase State 3B (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Atp Synthase State 3B (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:44.8 occ:1.00 OG1 B:THR176 2.8 41.0 1.0 O3G B:ATP601 2.9 50.6 1.0 OE1 B:GLN208 3.0 37.5 1.0 OD2 B:ASP269 3.0 36.4 1.0 OD1 B:ASP269 3.2 36.4 1.0 CD B:GLN208 3.4 37.5 1.0 CG B:ASP269 3.5 36.4 1.0 O1B B:ATP601 3.6 50.6 1.0 NE2 B:GLN208 3.8 37.5 1.0 CB B:THR176 4.1 41.0 1.0 CG B:GLN208 4.3 37.5 1.0 PG B:ATP601 4.4 50.6 1.0 CG2 B:THR176 4.4 41.0 1.0 OH B:TYR203 4.7 35.2 1.0 PB B:ATP601 4.8 50.6 1.0 CB B:ASP269 4.9 36.4 1.0 O1G B:ATP601 4.9 50.6 1.0

Magnesium binding site 3 out of 5 in the Human Atp Synthase State 3B (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Atp Synthase State 3B (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:46.6 occ:1.00 OG1 C:THR176 2.9 41.0 1.0 O1G C:ATP601 2.9 50.2 1.0 OD1 C:ASP269 2.9 37.4 1.0 O1B C:ATP601 3.5 50.2 1.0 OE1 C:GLN208 3.6 36.8 1.0 CG C:ASP269 3.6 37.4 1.0 OD2 C:ASP269 3.7 37.4 1.0 PG C:ATP601 4.2 50.2 1.0 CB C:THR176 4.3 41.0 1.0 O2G C:ATP601 4.6 50.2 1.0 PB C:ATP601 4.6 50.2 1.0 CD C:GLN208 4.6 36.8 1.0 OD2 C:ASP270 4.7 36.1 1.0 O3B C:ATP601 4.8 50.2 1.0 CG2 C:THR176 4.8 41.0 1.0 CE C:LYS175 4.9 40.3 1.0 N C:THR176 4.9 41.0 1.0 O2B C:ATP601 4.9 50.2 1.0 CB C:ASP269 5.0 37.4 1.0

Magnesium binding site 4 out of 5 in the Human Atp Synthase State 3B (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Atp Synthase State 3B (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:42.9 occ:1.00 OG1 F:THR166 3.0 45.7 1.0 O3B F:ADP501 3.1 50.5 1.0 OD1 F:ASP259 3.1 40.6 1.0 OE2 F:GLU191 3.6 39.5 1.0 OD2 F:ASP259 3.6 40.6 1.0 CD F:GLU191 3.7 39.5 1.0 CG F:ASP259 3.8 40.6 1.0 CG F:GLU191 4.0 39.5 1.0 CE F:LYS165 4.0 40.7 1.0 ND2 F:ASN260 4.1 33.6 1.0 PB F:ADP501 4.2 50.5 1.0 OE1 F:GLU191 4.3 39.5 1.0 CB F:THR166 4.3 45.7 1.0 CB F:LYS165 4.3 40.7 1.0 N F:THR166 4.3 45.7 1.0 O1B F:ADP501 4.4 50.5 1.0 O2B F:ADP501 4.5 50.5 1.0 CA F:THR166 4.6 45.7 1.0 CB F:ASN260 4.7 33.6 1.0 CB F:ALA312 4.8 31.4 1.0 CG F:ASN260 4.8 33.6 1.0 CG2 F:THR166 4.9 45.7 1.0 NZ F:LYS165 4.9 40.7 1.0 NH2 F:ARG192 4.9 39.4 1.0 CD F:LYS165 5.0 40.7 1.0 OE2 F:GLU195 5.0 43.8 1.0

Magnesium binding site 5 out of 5 in the Human Atp Synthase State 3B (Combined)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Human Atp Synthase State 3B (Combined) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:30.0 occ:1.00 O3B D:ADP501 2.8 30.0 1.0 O2A D:ADP501 2.9 30.0 1.0 O D:ALA312 3.5 63.7 1.0 N D:ILE261 3.7 60.0 1.0 OD1 D:ASN260 3.8 59.5 1.0 N D:PHE262 3.8 58.9 1.0 PB D:ADP501 3.8 30.0 1.0 O2B D:ADP501 4.0 30.0 1.0 PA D:ADP501 4.1 30.0 1.0 O3A D:ADP501 4.3 30.0 1.0 CA D:ASN260 4.3 59.5 1.0 CB D:ILE261 4.3 60.0 1.0 CB D:PHE262 4.3 58.9 1.0 CA D:ILE261 4.4 60.0 1.0 C D:ASN260 4.5 59.5 1.0 C D:ILE261 4.6 60.0 1.0 CG D:ASN260 4.6 59.5 1.0 CB D:ASN260 4.6 59.5 1.0 C D:ALA312 4.7 63.7 1.0 CA D:PHE262 4.7 58.9 1.0 O1A D:ADP501 4.8 30.0 1.0

Y.Lai, Y.Zhang, F.Liu, Y.Gao, H.Gong, Z.Rao. Structure of the Human Atp Synthase Mol.Cell 2023.
ISSN: ISSN 1097-2765
DOI: 10.1016/J.MOLCEL.2023.04.029