Magnesium in PDB 8he5: Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome

Enzymatic activity of Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome

All present enzymatic activity of Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome:
2.7.7.6;

Other elements in 8he5:

The structure of Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome also contains other interesting chemical elements:

Zinc

(Zn)

9 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome (pdb code 8he5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome, PDB code: 8he5:

Magnesium binding site 1 out of 1 in 8he5

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Magnesium Binding Sites List in 8he5

Magnesium binding site 1 out of 1 in the Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna Polymerase II Elongation Complex Bound with RAD26 and ELF1, Stalled at Shl(-3.5) of the Nucleosome within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg1803 b:754.5 occ:1.00	O2	P:U10	2.0	858.0	1.0
	OD1	A:ASP486	2.1	704.0	1.0
	CG	A:ASP486	2.2	704.0	1.0
	C2	P:U10	2.3	858.0	1.0
	NH2	A:ARG447	2.4	931.4	1.0
	C1'	P:U10	2.5	858.0	1.0
	N1	P:U10	2.5	858.0	1.0
	CB	A:ASP486	2.8	704.0	1.0
	OD2	A:ASP486	2.8	704.0	1.0
	O4'	P:U10	3.1	858.0	1.0
	CA	A:ASP486	3.3	704.0	1.0
	N3	P:U10	3.3	858.0	1.0
	CZ	A:ARG447	3.5	931.4	1.0
	C6	P:U10	3.6	858.0	1.0
	C2'	P:U10	3.9	858.0	1.0
	NE	A:ARG447	3.9	931.4	1.0
	N	A:ASP486	4.1	704.0	1.0
	O2'	P:U10	4.2	858.0	1.0
	C4	P:U10	4.3	858.0	1.0
	C5	P:U10	4.4	858.0	1.0
	C	A:ASP486	4.5	704.0	1.0
	C4'	P:U10	4.5	858.0	1.0
	OD1	A:ASP484	4.6	635.9	1.0
	N	A:GLU487	4.6	847.8	1.0
	NH1	A:ARG447	4.7	931.4	1.0
	OD1	A:ASP482	4.7	625.4	1.0
	C3'	P:U10	4.9	858.0	1.0
	C	A:GLY485	4.9	667.6	1.0

Reference:

K.Osumi, T.Kujirai, H.Ehara, M.Ogasawara, C.Kinoshita, M.Saotome, W.Kagawa, S.I.Sekine, Y.Takizawa, H.Kurumizaka. Structural Basis of Damaged Nucleotide Recognition By Transcribing Rna Polymerase II in the Nucleosome. J.Mol.Biol. V. 435 68130 2023.
ISSN: ESSN 1089-8638
PubMed: 37120012
DOI: 10.1016/J.JMB.2023.168130

Page generated: Fri Aug 15 06:22:41 2025

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