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Magnesium in PDB 8iek: Cryo-Em Structure of ATP13A2 in the E1-Atp State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 in the E1-Atp State (pdb code 8iek). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of ATP13A2 in the E1-Atp State, PDB code: 8iek:

Magnesium binding site 1 out of 1 in 8iek

Go back to Magnesium Binding Sites List in 8iek
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of ATP13A2 in the E1-Atp State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 in the E1-Atp State within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg1202

b:86.2
occ:1.00
O P:THR515 2.7 72.9 1.0
O1G P:ATP1201 3.0 89.6 1.0
HB3 P:ASP878 3.3 83.8 1.0
HB P:THR515 3.4 72.9 1.0
H P:GLY879 3.4 88.8 1.0
HB3 P:ASP513 3.8 70.2 1.0
C P:THR515 3.8 72.9 1.0
HA3 P:GLY879 3.9 88.8 1.0
N P:GLY879 4.0 88.8 1.0
PG P:ATP1201 4.2 89.6 1.0
OD2 P:ASP513 4.2 70.2 1.0
CB P:THR515 4.2 72.9 1.0
HA3 P:GLY516 4.2 73.0 1.0
H P:THR515 4.3 72.9 1.0
O3G P:ATP1201 4.3 89.6 1.0
CB P:ASP878 4.3 83.8 1.0
HD22 P:ASN881 4.3 87.1 1.0
HG22 P:THR515 4.4 72.9 1.0
H P:ASP878 4.4 83.8 1.0
CA P:GLY879 4.4 88.8 1.0
CA P:THR515 4.4 72.9 1.0
HG1 P:THR517 4.5 72.6 1.0
CB P:ASP513 4.5 70.2 1.0
HB2 P:ASP513 4.6 70.2 1.0
H P:THR517 4.6 72.6 1.0
N P:THR515 4.6 72.9 1.0
HA2 P:GLY879 4.7 88.8 1.0
N P:GLY516 4.7 73.0 1.0
HB2 P:ASP878 4.8 83.8 1.0
CG P:ASP513 4.8 70.2 1.0
CG2 P:THR515 4.8 72.9 1.0
C P:ASP878 4.8 83.8 1.0
O2B P:ATP1201 4.9 89.6 1.0
OD2 P:ASP878 4.9 83.8 1.0
CA P:GLY516 4.9 73.0 1.0
CG P:ASP878 5.0 83.8 1.0
O2G P:ATP1201 5.0 89.6 1.0
CA P:ASP878 5.0 83.8 1.0

Reference:

J.Mu, C.Xue, L.Fu, Z.Yu, M.Nie, M.Wu, X.Chen, K.Liu, R.Bu, Y.Huang, B.Yang, J.Han, Q.Jiang, K.C.Chan, R.Zhou, H.Li, A.Huang, Y.Wang, Z.Liu. Conformational Cycle of Human Polyamine Transporter ATP13A2. Nat Commun V. 14 1978 2023.
ISSN: ESSN 2041-1723
PubMed: 37031211
DOI: 10.1038/S41467-023-37741-0
Page generated: Fri Oct 4 09:22:05 2024

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