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Magnesium in PDB 8oev: Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3)

Enzymatic activity of Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3)

All present enzymatic activity of Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3):
2.7.7.6;

Other elements in 8oev:

The structure of Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3) also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3) (pdb code 8oev). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3), PDB code: 8oev:

Magnesium binding site 1 out of 1 in 8oev

Go back to Magnesium Binding Sites List in 8oev
Magnesium binding site 1 out of 1 in the Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Mammalian Pol II-SPT6-Elongin Complex, Lacking Eloa Latch (Composite Structure, Structure 3) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:18.9
occ:1.00
OD1 A:ASP497 2.1 12.3 1.0
O3' P:U46 2.1 20.1 1.0
OD1 A:ASP499 2.1 13.5 1.0
OD1 A:ASP495 2.2 12.6 1.0
CG A:ASP499 2.9 13.5 1.0
CG A:ASP497 3.0 12.3 1.0
CG A:ASP495 3.0 12.6 1.0
OD2 A:ASP499 3.0 13.5 1.0
OD2 A:ASP497 3.2 12.3 1.0
OD2 A:ASP495 3.3 12.6 1.0
C3' P:U46 3.4 20.1 1.0
O2' P:U46 3.8 20.1 1.0
C4' P:U46 3.8 20.1 1.0
C2' P:U46 4.2 20.1 1.0
N A:ASP495 4.3 12.6 1.0
CB A:ASP499 4.3 13.5 1.0
CB A:ASP495 4.4 12.6 1.0
CB A:ASP497 4.4 12.3 1.0
C5' P:U46 4.4 20.1 1.0
O A:ASP495 4.4 12.6 1.0
N A:ASP497 4.5 12.3 1.0
C A:ASP495 4.5 12.6 1.0
CA A:ASP495 4.6 12.6 1.0
N A:ASP499 4.7 13.5 1.0
CA A:ASP497 4.8 12.3 1.0
CA A:ASP499 4.8 13.5 1.0
C A:ASP497 4.9 12.3 1.0

Reference:

Y.Chen, G.Kokic, C.Dienemann, O.Dybkov, H.Urlaub, P.Cramer. Structure of Transcribing Rna Polymerase II-Elongin Complex Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-01138-W
Page generated: Fri Oct 4 14:42:57 2024

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