Magnesium in PDB 8ov5: Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
Protein crystallography data
The structure of Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K, PDB code: 8ov5
was solved by
E.Hofmann,
S.Johanning,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
43.38 /
1.15
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
197.14,
115.61,
65.88,
90,
94.97,
90
|
|
R / Rfree (%)
|
14.1 /
15.5
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
(pdb code 8ov5). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K, PDB code: 8ov5:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 8ov5
Go back to
Magnesium Binding Sites List in 8ov5
Magnesium binding site 1 out
of 6 in the Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg601
b:10.8
occ:1.00
|
MG
|
M:CLA601
|
0.0
|
10.8
|
1.0
|
|
ND
|
M:CLA601
|
2.0
|
10.9
|
1.0
|
|
O
|
M:HOH701
|
2.0
|
11.6
|
1.0
|
|
NB
|
M:CLA601
|
2.1
|
10.2
|
1.0
|
|
NC
|
M:CLA601
|
2.1
|
10.6
|
1.0
|
|
NA
|
M:CLA601
|
2.2
|
10.5
|
1.0
|
|
C4D
|
M:CLA601
|
2.9
|
11.4
|
1.0
|
|
C1B
|
M:CLA601
|
3.1
|
10.5
|
1.0
|
|
C4B
|
M:CLA601
|
3.1
|
10.2
|
1.0
|
|
C1C
|
M:CLA601
|
3.1
|
10.5
|
1.0
|
|
C4A
|
M:CLA601
|
3.1
|
10.9
|
1.0
|
|
C4C
|
M:CLA601
|
3.1
|
11.3
|
1.0
|
|
C1D
|
M:CLA601
|
3.1
|
11.2
|
1.0
|
|
C1A
|
M:CLA601
|
3.2
|
10.9
|
1.0
|
|
H22
|
M:PID612
|
3.4
|
13.4
|
1.0
|
|
CHC
|
M:CLA601
|
3.4
|
10.4
|
1.0
|
|
CHB
|
M:CLA601
|
3.4
|
10.4
|
1.0
|
|
CHA
|
M:CLA601
|
3.5
|
11.3
|
1.0
|
|
CHD
|
M:CLA601
|
3.5
|
11.4
|
1.0
|
|
NE2
|
M:HIS66
|
3.9
|
11.6
|
1.0
|
|
HD11
|
M:LEU92
|
4.0
|
17.0
|
1.0
|
|
HIB3
|
M:W4I615
|
4.2
|
25.9
|
1.0
|
|
C3D
|
M:CLA601
|
4.2
|
11.6
|
1.0
|
|
C22
|
M:PID612
|
4.3
|
11.2
|
1.0
|
|
C2B
|
M:CLA601
|
4.3
|
10.5
|
1.0
|
|
C3B
|
M:CLA601
|
4.3
|
10.5
|
1.0
|
|
H19
|
M:PID614
|
4.3
|
13.8
|
1.0
|
|
HM52
|
M:PID614
|
4.3
|
14.1
|
1.0
|
|
C2D
|
M:CLA601
|
4.4
|
12.0
|
1.0
|
|
C2C
|
M:CLA601
|
4.4
|
11.0
|
1.0
|
|
C3C
|
M:CLA601
|
4.4
|
12.1
|
1.0
|
|
HIB1
|
M:W4I615
|
4.4
|
25.9
|
1.0
|
|
HM53
|
M:PID614
|
4.5
|
14.1
|
1.0
|
|
C3A
|
M:CLA601
|
4.5
|
11.0
|
1.0
|
|
C2A
|
M:CLA601
|
4.5
|
11.5
|
1.0
|
|
HHC
|
M:CLA601
|
4.5
|
12.5
|
1.0
|
|
HHB
|
M:CLA601
|
4.5
|
12.4
|
1.0
|
|
CD2
|
M:HIS66
|
4.6
|
11.4
|
1.0
|
|
HHD
|
M:CLA601
|
4.6
|
13.7
|
1.0
|
|
HD2
|
M:HIS66
|
4.7
|
13.8
|
1.0
|
|
C23
|
M:PID612
|
4.7
|
11.5
|
1.0
|
|
CE1
|
M:HIS66
|
4.7
|
11.3
|
1.0
|
|
HE1
|
M:HIS66
|
4.8
|
13.6
|
1.0
|
|
HD13
|
M:LEU92
|
4.8
|
17.0
|
1.0
|
|
CD1
|
M:LEU92
|
4.8
|
14.1
|
1.0
|
|
C19
|
M:PID614
|
4.8
|
11.5
|
1.0
|
|
CM5
|
M:PID614
|
4.9
|
11.8
|
1.0
|
|
H17
|
M:PID614
|
4.9
|
15.1
|
1.0
|
|
CIB
|
M:W4I615
|
4.9
|
21.6
|
1.0
|
|
HMA3
|
M:CLA601
|
4.9
|
14.2
|
1.0
|
|
H20
|
M:PID612
|
4.9
|
14.0
|
1.0
|
|
CBD
|
M:CLA601
|
4.9
|
11.6
|
1.0
|
|
HM73
|
M:PID612
|
4.9
|
15.6
|
1.0
|
|
HM61
|
M:PID612
|
5.0
|
16.2
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 8ov5
Go back to
Magnesium Binding Sites List in 8ov5
Magnesium binding site 2 out
of 6 in the Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg602
b:9.3
occ:1.00
|
MG
|
M:CLA602
|
0.0
|
9.3
|
1.0
|
|
O
|
M:HOH702
|
2.0
|
9.5
|
1.0
|
|
ND
|
M:CLA602
|
2.0
|
9.1
|
1.0
|
|
NB
|
M:CLA602
|
2.1
|
9.2
|
1.0
|
|
NC
|
M:CLA602
|
2.1
|
8.9
|
1.0
|
|
NA
|
M:CLA602
|
2.2
|
8.8
|
1.0
|
|
C4D
|
M:CLA602
|
2.9
|
9.0
|
1.0
|
|
C1B
|
M:CLA602
|
3.1
|
9.1
|
1.0
|
|
C4B
|
M:CLA602
|
3.1
|
9.5
|
1.0
|
|
C1C
|
M:CLA602
|
3.1
|
9.5
|
1.0
|
|
C1D
|
M:CLA602
|
3.1
|
9.1
|
1.0
|
|
C4C
|
M:CLA602
|
3.1
|
9.3
|
1.0
|
|
C4A
|
M:CLA602
|
3.1
|
8.6
|
1.0
|
|
C1A
|
M:CLA602
|
3.2
|
8.8
|
1.0
|
|
H22
|
M:PID622
|
3.4
|
13.3
|
1.0
|
|
CHC
|
M:CLA602
|
3.4
|
9.4
|
1.0
|
|
CHB
|
M:CLA602
|
3.4
|
8.8
|
1.0
|
|
CHD
|
M:CLA602
|
3.5
|
9.2
|
1.0
|
|
CHA
|
M:CLA602
|
3.5
|
8.8
|
1.0
|
|
NE2
|
M:HIS229
|
4.0
|
9.3
|
1.0
|
|
HIB3
|
M:W4I625
|
4.0
|
17.0
|
1.0
|
|
HM53
|
M:PID624
|
4.1
|
12.5
|
1.0
|
|
HD11
|
M:LEU254
|
4.1
|
13.0
|
1.0
|
|
C22
|
M:PID622
|
4.2
|
11.1
|
1.0
|
|
C3D
|
M:CLA602
|
4.2
|
9.2
|
1.0
|
|
H19
|
M:PID624
|
4.3
|
11.5
|
1.0
|
|
C2B
|
M:CLA602
|
4.3
|
9.3
|
1.0
|
|
C2D
|
M:CLA602
|
4.3
|
9.3
|
1.0
|
|
C3B
|
M:CLA602
|
4.3
|
9.7
|
1.0
|
|
C2C
|
M:CLA602
|
4.3
|
9.8
|
1.0
|
|
HM52
|
M:PID624
|
4.3
|
12.5
|
1.0
|
|
C3C
|
M:CLA602
|
4.4
|
10.0
|
1.0
|
|
HD13
|
M:LEU254
|
4.5
|
13.0
|
1.0
|
|
C3A
|
M:CLA602
|
4.5
|
9.1
|
1.0
|
|
HHC
|
M:CLA602
|
4.5
|
11.2
|
1.0
|
|
HHB
|
M:CLA602
|
4.5
|
10.6
|
1.0
|
|
HIB1
|
M:W4I625
|
4.5
|
17.0
|
1.0
|
|
C2A
|
M:CLA602
|
4.6
|
8.9
|
1.0
|
|
HHD
|
M:CLA602
|
4.6
|
11.1
|
1.0
|
|
C23
|
M:PID622
|
4.6
|
10.6
|
1.0
|
|
HHB1
|
M:W4I625
|
4.7
|
17.9
|
1.0
|
|
CD2
|
M:HIS229
|
4.7
|
9.0
|
1.0
|
|
HD2
|
M:HIS229
|
4.7
|
10.8
|
1.0
|
|
CM5
|
M:PID624
|
4.7
|
10.4
|
1.0
|
|
CIB
|
M:W4I625
|
4.7
|
14.2
|
1.0
|
|
CD1
|
M:LEU254
|
4.8
|
10.8
|
1.0
|
|
H17
|
M:PID624
|
4.8
|
11.6
|
1.0
|
|
C19
|
M:PID624
|
4.8
|
9.6
|
1.0
|
|
CE1
|
M:HIS229
|
4.8
|
9.4
|
1.0
|
|
H20
|
M:PID622
|
4.9
|
12.7
|
1.0
|
|
HE1
|
M:HIS229
|
4.9
|
11.3
|
1.0
|
|
CBD
|
M:CLA602
|
5.0
|
9.7
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 8ov5
Go back to
Magnesium Binding Sites List in 8ov5
Magnesium binding site 3 out
of 6 in the Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Mg601
b:13.0
occ:1.00
|
MG
|
N:CLA601
|
0.0
|
13.0
|
1.0
|
|
ND
|
N:CLA601
|
2.0
|
13.4
|
1.0
|
|
NB
|
N:CLA601
|
2.1
|
12.3
|
1.0
|
|
O
|
N:HOH701
|
2.1
|
13.6
|
1.0
|
|
NC
|
N:CLA601
|
2.1
|
12.7
|
1.0
|
|
NA
|
N:CLA601
|
2.1
|
13.1
|
1.0
|
|
C4D
|
N:CLA601
|
2.9
|
13.8
|
1.0
|
|
C4B
|
N:CLA601
|
3.1
|
12.5
|
1.0
|
|
C1B
|
N:CLA601
|
3.1
|
12.2
|
1.0
|
|
C1C
|
N:CLA601
|
3.1
|
13.0
|
1.0
|
|
C4A
|
N:CLA601
|
3.1
|
12.7
|
1.0
|
|
C4C
|
N:CLA601
|
3.1
|
13.7
|
1.0
|
|
C1D
|
N:CLA601
|
3.2
|
14.1
|
1.0
|
|
C1A
|
N:CLA601
|
3.2
|
13.1
|
1.0
|
|
H22
|
N:PID612
|
3.4
|
16.1
|
1.0
|
|
CHC
|
N:CLA601
|
3.4
|
13.2
|
1.0
|
|
CHB
|
N:CLA601
|
3.5
|
11.9
|
1.0
|
|
CHA
|
N:CLA601
|
3.5
|
13.6
|
1.0
|
|
CHD
|
N:CLA601
|
3.5
|
13.8
|
1.0
|
|
NE2
|
N:HIS66
|
3.9
|
14.0
|
1.0
|
|
HD11
|
N:LEU92
|
4.0
|
21.6
|
1.0
|
|
HIB1
|
N:W4I615
|
4.2
|
31.5
|
1.0
|
|
C22
|
N:PID612
|
4.2
|
13.4
|
1.0
|
|
C3D
|
N:CLA601
|
4.2
|
14.5
|
1.0
|
|
H19
|
N:PID614
|
4.3
|
17.1
|
1.0
|
|
HIB3
|
N:W4I615
|
4.3
|
31.5
|
1.0
|
|
C3B
|
N:CLA601
|
4.3
|
12.5
|
1.0
|
|
HM53
|
N:PID614
|
4.3
|
16.7
|
1.0
|
|
C2B
|
N:CLA601
|
4.3
|
12.4
|
1.0
|
|
C2C
|
N:CLA601
|
4.3
|
13.9
|
1.0
|
|
C2D
|
N:CLA601
|
4.3
|
14.3
|
1.0
|
|
C3C
|
N:CLA601
|
4.4
|
14.2
|
1.0
|
|
HM52
|
N:PID614
|
4.5
|
16.7
|
1.0
|
|
C3A
|
N:CLA601
|
4.5
|
13.0
|
1.0
|
|
C2A
|
N:CLA601
|
4.5
|
13.0
|
1.0
|
|
HHC
|
N:CLA601
|
4.5
|
15.8
|
1.0
|
|
HHB
|
N:CLA601
|
4.6
|
14.3
|
1.0
|
|
HHD
|
N:CLA601
|
4.6
|
16.6
|
1.0
|
|
CD2
|
N:HIS66
|
4.6
|
13.8
|
1.0
|
|
C23
|
N:PID612
|
4.6
|
13.9
|
1.0
|
|
CE1
|
N:HIS66
|
4.7
|
14.1
|
1.0
|
|
HD2
|
N:HIS66
|
4.7
|
16.6
|
1.0
|
|
HD13
|
N:LEU92
|
4.7
|
21.6
|
1.0
|
|
HE1
|
N:HIS66
|
4.8
|
17.0
|
1.0
|
|
CIB
|
N:W4I615
|
4.8
|
26.2
|
1.0
|
|
CD1
|
N:LEU92
|
4.8
|
18.0
|
1.0
|
|
CM5
|
N:PID614
|
4.8
|
13.9
|
1.0
|
|
C19
|
N:PID614
|
4.9
|
14.3
|
1.0
|
|
H20
|
N:PID612
|
4.9
|
15.8
|
1.0
|
|
HM73
|
N:PID612
|
4.9
|
18.2
|
1.0
|
|
HMA3
|
N:CLA601
|
4.9
|
16.4
|
1.0
|
|
H17
|
N:PID614
|
4.9
|
17.4
|
1.0
|
|
HD21
|
N:LEU92
|
4.9
|
20.2
|
1.0
|
|
CBD
|
N:CLA601
|
4.9
|
14.7
|
1.0
|
|
HM62
|
N:PID612
|
5.0
|
18.1
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 8ov5
Go back to
Magnesium Binding Sites List in 8ov5
Magnesium binding site 4 out
of 6 in the Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Mg602
b:11.8
occ:1.00
|
MG
|
N:CLA602
|
0.0
|
11.8
|
1.0
|
|
ND
|
N:CLA602
|
2.0
|
11.6
|
1.0
|
|
NB
|
N:CLA602
|
2.0
|
11.9
|
1.0
|
|
O
|
N:HOH702
|
2.0
|
11.8
|
1.0
|
|
NC
|
N:CLA602
|
2.1
|
11.4
|
1.0
|
|
NA
|
N:CLA602
|
2.2
|
10.6
|
1.0
|
|
C4D
|
N:CLA602
|
2.9
|
11.8
|
1.0
|
|
C4B
|
N:CLA602
|
3.1
|
12.0
|
1.0
|
|
C1B
|
N:CLA602
|
3.1
|
11.3
|
1.0
|
|
C1C
|
N:CLA602
|
3.1
|
11.9
|
1.0
|
|
C4A
|
N:CLA602
|
3.1
|
10.8
|
1.0
|
|
C4C
|
N:CLA602
|
3.2
|
12.7
|
1.0
|
|
C1D
|
N:CLA602
|
3.2
|
11.9
|
1.0
|
|
C1A
|
N:CLA602
|
3.2
|
10.4
|
1.0
|
|
H22
|
N:PID622
|
3.3
|
15.9
|
1.0
|
|
CHC
|
N:CLA602
|
3.4
|
11.9
|
1.0
|
|
CHB
|
N:CLA602
|
3.5
|
11.3
|
1.0
|
|
CHA
|
N:CLA602
|
3.5
|
11.3
|
1.0
|
|
CHD
|
N:CLA602
|
3.5
|
12.4
|
1.0
|
|
NE2
|
N:HIS229
|
4.0
|
12.6
|
1.0
|
|
HD11
|
N:LEU254
|
4.1
|
15.5
|
1.0
|
|
HIB2
|
N:W4I625
|
4.2
|
20.0
|
1.0
|
|
C22
|
N:PID622
|
4.2
|
13.3
|
1.0
|
|
HM52
|
N:PID624
|
4.2
|
16.2
|
1.0
|
|
H19
|
N:PID624
|
4.2
|
14.7
|
1.0
|
|
C3D
|
N:CLA602
|
4.2
|
12.0
|
1.0
|
|
HM51
|
N:PID624
|
4.3
|
16.2
|
1.0
|
|
HIB3
|
N:W4I625
|
4.3
|
20.0
|
1.0
|
|
C3B
|
N:CLA602
|
4.3
|
12.2
|
1.0
|
|
C2B
|
N:CLA602
|
4.3
|
12.4
|
1.0
|
|
C2D
|
N:CLA602
|
4.4
|
12.1
|
1.0
|
|
C2C
|
N:CLA602
|
4.4
|
12.6
|
1.0
|
|
C3C
|
N:CLA602
|
4.4
|
12.8
|
1.0
|
|
HD13
|
N:LEU254
|
4.5
|
15.5
|
1.0
|
|
C3A
|
N:CLA602
|
4.5
|
11.2
|
1.0
|
|
HHC
|
N:CLA602
|
4.5
|
14.3
|
1.0
|
|
C23
|
N:PID622
|
4.5
|
13.6
|
1.0
|
|
C2A
|
N:CLA602
|
4.5
|
10.7
|
1.0
|
|
HHB
|
N:CLA602
|
4.5
|
13.5
|
1.0
|
|
HHD
|
N:CLA602
|
4.6
|
14.9
|
1.0
|
|
HD2
|
N:HIS229
|
4.7
|
15.2
|
1.0
|
|
HHB2
|
N:W4I625
|
4.7
|
20.4
|
1.0
|
|
CD2
|
N:HIS229
|
4.7
|
12.6
|
1.0
|
|
CM5
|
N:PID624
|
4.7
|
13.5
|
1.0
|
|
CIB
|
N:W4I625
|
4.7
|
16.7
|
1.0
|
|
CD1
|
N:LEU254
|
4.8
|
12.9
|
1.0
|
|
C19
|
N:PID624
|
4.8
|
12.2
|
1.0
|
|
CE1
|
N:HIS229
|
4.8
|
12.6
|
1.0
|
|
H17
|
N:PID624
|
4.8
|
15.2
|
1.0
|
|
H20
|
N:PID622
|
4.9
|
15.0
|
1.0
|
|
HE1
|
N:HIS229
|
4.9
|
15.1
|
1.0
|
|
CBD
|
N:CLA602
|
5.0
|
12.0
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 8ov5
Go back to
Magnesium Binding Sites List in 8ov5
Magnesium binding site 5 out
of 6 in the Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg601
b:10.3
occ:1.00
|
MG
|
O:CLA601
|
0.0
|
10.3
|
1.0
|
|
ND
|
O:CLA601
|
2.0
|
10.5
|
1.0
|
|
O
|
O:HOH701
|
2.0
|
11.0
|
1.0
|
|
NB
|
O:CLA601
|
2.0
|
10.1
|
1.0
|
|
NC
|
O:CLA601
|
2.1
|
10.3
|
1.0
|
|
NA
|
O:CLA601
|
2.2
|
10.2
|
1.0
|
|
C4D
|
O:CLA601
|
2.9
|
10.2
|
1.0
|
|
C1B
|
O:CLA601
|
3.0
|
9.9
|
1.0
|
|
C4B
|
O:CLA601
|
3.1
|
10.2
|
1.0
|
|
C1C
|
O:CLA601
|
3.1
|
10.4
|
1.0
|
|
C4A
|
O:CLA601
|
3.1
|
10.0
|
1.0
|
|
C4C
|
O:CLA601
|
3.1
|
11.0
|
1.0
|
|
C1D
|
O:CLA601
|
3.1
|
10.7
|
1.0
|
|
C1A
|
O:CLA601
|
3.2
|
10.0
|
1.0
|
|
H22
|
O:PID612
|
3.4
|
13.8
|
1.0
|
|
CHC
|
O:CLA601
|
3.4
|
10.2
|
1.0
|
|
CHB
|
O:CLA601
|
3.4
|
9.6
|
1.0
|
|
CHA
|
O:CLA601
|
3.5
|
10.1
|
1.0
|
|
CHD
|
O:CLA601
|
3.5
|
10.6
|
1.0
|
|
NE2
|
O:HIS66
|
3.9
|
11.4
|
1.0
|
|
HD11
|
O:LEU92
|
4.1
|
17.2
|
1.0
|
|
C3D
|
O:CLA601
|
4.2
|
11.5
|
1.0
|
|
HIB1
|
O:W4I615
|
4.3
|
26.2
|
1.0
|
|
C22
|
O:PID612
|
4.3
|
11.5
|
1.0
|
|
C2B
|
O:CLA601
|
4.3
|
10.2
|
1.0
|
|
C3B
|
O:CLA601
|
4.3
|
10.5
|
1.0
|
|
C2C
|
O:CLA601
|
4.3
|
11.0
|
1.0
|
|
HM52
|
O:PID614
|
4.3
|
14.5
|
1.0
|
|
HIB2
|
O:W4I615
|
4.3
|
26.2
|
1.0
|
|
H19
|
O:PID614
|
4.3
|
14.1
|
1.0
|
|
C2D
|
O:CLA601
|
4.3
|
11.3
|
1.0
|
|
C3C
|
O:CLA601
|
4.4
|
11.7
|
1.0
|
|
HM53
|
O:PID614
|
4.5
|
14.5
|
1.0
|
|
C3A
|
O:CLA601
|
4.5
|
10.8
|
1.0
|
|
HHC
|
O:CLA601
|
4.5
|
12.2
|
1.0
|
|
C2A
|
O:CLA601
|
4.5
|
10.7
|
1.0
|
|
HHB
|
O:CLA601
|
4.5
|
11.5
|
1.0
|
|
CD2
|
O:HIS66
|
4.6
|
10.8
|
1.0
|
|
HHD
|
O:CLA601
|
4.6
|
12.7
|
1.0
|
|
C23
|
O:PID612
|
4.6
|
12.0
|
1.0
|
|
CE1
|
O:HIS66
|
4.7
|
11.4
|
1.0
|
|
HD2
|
O:HIS66
|
4.7
|
13.0
|
1.0
|
|
HD13
|
O:LEU92
|
4.7
|
17.2
|
1.0
|
|
HE1
|
O:HIS66
|
4.7
|
13.7
|
1.0
|
|
CD1
|
O:LEU92
|
4.8
|
14.3
|
1.0
|
|
H20
|
O:PID612
|
4.8
|
13.1
|
1.0
|
|
CM5
|
O:PID614
|
4.9
|
12.1
|
1.0
|
|
C19
|
O:PID614
|
4.9
|
11.8
|
1.0
|
|
CIB
|
O:W4I615
|
4.9
|
21.8
|
1.0
|
|
H17
|
O:PID614
|
4.9
|
14.9
|
1.0
|
|
CBD
|
O:CLA601
|
4.9
|
10.9
|
1.0
|
|
HM71
|
O:PID612
|
4.9
|
15.6
|
1.0
|
|
HMA3
|
O:CLA601
|
4.9
|
13.7
|
1.0
|
|
HD21
|
O:LEU92
|
5.0
|
16.6
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 8ov5
Go back to
Magnesium Binding Sites List in 8ov5
Magnesium binding site 6 out
of 6 in the Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Peridinin-Chlorophyll-Protein of Amphidinium Carterae, 100K within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg602
b:9.1
occ:1.00
|
MG
|
O:CLA602
|
0.0
|
9.1
|
1.0
|
|
ND
|
O:CLA602
|
2.0
|
9.0
|
1.0
|
|
NB
|
O:CLA602
|
2.0
|
8.9
|
1.0
|
|
O
|
O:HOH702
|
2.1
|
9.3
|
1.0
|
|
NC
|
O:CLA602
|
2.1
|
8.9
|
1.0
|
|
NA
|
O:CLA602
|
2.2
|
8.3
|
1.0
|
|
C4D
|
O:CLA602
|
3.0
|
9.2
|
1.0
|
|
C1B
|
O:CLA602
|
3.1
|
8.9
|
1.0
|
|
C4B
|
O:CLA602
|
3.1
|
9.1
|
1.0
|
|
C1C
|
O:CLA602
|
3.1
|
9.1
|
1.0
|
|
C4A
|
O:CLA602
|
3.1
|
8.2
|
1.0
|
|
C1D
|
O:CLA602
|
3.1
|
9.3
|
1.0
|
|
C4C
|
O:CLA602
|
3.1
|
9.2
|
1.0
|
|
C1A
|
O:CLA602
|
3.2
|
8.6
|
1.0
|
|
H22
|
O:PID622
|
3.3
|
12.4
|
1.0
|
|
CHC
|
O:CLA602
|
3.4
|
8.8
|
1.0
|
|
CHB
|
O:CLA602
|
3.4
|
8.7
|
1.0
|
|
CHA
|
O:CLA602
|
3.5
|
8.9
|
1.0
|
|
CHD
|
O:CLA602
|
3.5
|
9.4
|
1.0
|
|
HIB3
|
O:W4I625
|
3.8
|
18.1
|
1.0
|
|
NE2
|
O:HIS229
|
4.0
|
9.7
|
1.0
|
|
HD11
|
O:LEU254
|
4.1
|
13.0
|
1.0
|
|
C22
|
O:PID622
|
4.2
|
10.3
|
1.0
|
|
HM53
|
O:PID624
|
4.2
|
12.0
|
1.0
|
|
C3D
|
O:CLA602
|
4.2
|
9.1
|
1.0
|
|
HM51
|
O:PID624
|
4.3
|
12.0
|
1.0
|
|
H19
|
O:PID624
|
4.3
|
11.4
|
1.0
|
|
C2B
|
O:CLA602
|
4.3
|
9.2
|
1.0
|
|
C3B
|
O:CLA602
|
4.3
|
9.6
|
1.0
|
|
C2D
|
O:CLA602
|
4.3
|
9.1
|
1.0
|
|
C2C
|
O:CLA602
|
4.3
|
9.6
|
1.0
|
|
C3C
|
O:CLA602
|
4.4
|
9.5
|
1.0
|
|
HD13
|
O:LEU254
|
4.4
|
13.0
|
1.0
|
|
C3A
|
O:CLA602
|
4.5
|
8.5
|
1.0
|
|
HHC
|
O:CLA602
|
4.5
|
10.6
|
1.0
|
|
HHB
|
O:CLA602
|
4.5
|
10.4
|
1.0
|
|
C23
|
O:PID622
|
4.5
|
10.1
|
1.0
|
|
C2A
|
O:CLA602
|
4.6
|
8.7
|
1.0
|
|
HHD
|
O:CLA602
|
4.6
|
11.2
|
1.0
|
|
HIB1
|
O:W4I625
|
4.7
|
18.1
|
1.0
|
|
CIB
|
O:W4I625
|
4.7
|
15.1
|
1.0
|
|
CM5
|
O:PID624
|
4.7
|
10.0
|
1.0
|
|
CD2
|
O:HIS229
|
4.7
|
9.2
|
1.0
|
|
HHB2
|
O:W4I625
|
4.7
|
18.5
|
1.0
|
|
HD2
|
O:HIS229
|
4.7
|
11.1
|
1.0
|
|
H17
|
O:PID624
|
4.7
|
11.6
|
1.0
|
|
CD1
|
O:LEU254
|
4.8
|
10.8
|
1.0
|
|
CE1
|
O:HIS229
|
4.8
|
9.3
|
1.0
|
|
C19
|
O:PID624
|
4.8
|
9.5
|
1.0
|
|
H20
|
O:PID622
|
4.9
|
12.7
|
1.0
|
|
HE1
|
O:HIS229
|
4.9
|
11.1
|
1.0
|
|
CBD
|
O:CLA602
|
4.9
|
9.2
|
1.0
|
|
HM62
|
O:PID622
|
5.0
|
12.9
|
1.0
|
|
Reference:
T.Schulte,
N.C.M.Magdaong,
M.Di Valentin,
A.Agostini,
C.E.Tait,
D.M.Niedzwiedzki,
D.Carbonera,
E.Hofmann.
Structural and Spectroscopic Characterization of the Peridinin-Chlorophyll A-Protein (Pcp) Complex From Heterocapsa Pygmaea (Hppcp) To Be Published.
Page generated: Fri Aug 15 11:40:54 2025
|
