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Magnesium in PDB 8oz7: Abortive Infection Dna Polymerase Abia From Lactococcus Lactis

Protein crystallography data

The structure of Abortive Infection Dna Polymerase Abia From Lactococcus Lactis, PDB code: 8oz7 was solved by M.A.Gapinska, M.Nowotny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.49 / 2.75
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 84.09, 86.1, 117.01, 99.32, 90.18, 90.27
R / Rfree (%) 22 / 26.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Abortive Infection Dna Polymerase Abia From Lactococcus Lactis (pdb code 8oz7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Abortive Infection Dna Polymerase Abia From Lactococcus Lactis, PDB code: 8oz7:

Magnesium binding site 1 out of 1 in 8oz7

Go back to Magnesium Binding Sites List in 8oz7
Magnesium binding site 1 out of 1 in the Abortive Infection Dna Polymerase Abia From Lactococcus Lactis


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Abortive Infection Dna Polymerase Abia From Lactococcus Lactis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg701

b:84.1
occ:1.00
OE2 B:GLU516 2.2 61.0 0.5
CD B:GLU516 3.4 58.3 0.5
CG A:GLU516 3.5 63.5 1.0
OE2 A:GLU516 3.6 88.1 1.0
OH B:TYR520 3.9 58.8 1.0
NH2 B:ARG504 4.0 64.0 1.0
CD A:GLU516 4.0 83.6 1.0
CG B:GLU516 4.2 61.6 0.5
OE1 B:GLU516 4.3 56.0 0.5
CB A:VAL586 4.4 68.7 1.0
CE1 B:TYR520 4.5 55.3 1.0
CG1 A:VAL586 4.7 66.3 1.0
CB A:GLU516 4.7 56.9 1.0
CZ B:TYR520 4.8 59.9 1.0
CZ A:PHE508 4.8 53.5 1.0
CZ B:PHE508 4.8 46.5 1.0
CE2 A:TYR520 4.9 56.9 1.0
CG2 A:VAL586 5.0 62.8 1.0

Reference:

M.A.Gapinska, M.Nowotny. Structure of Template-Independent Protein-Priming Abortive Infection Polymerase Abia To Be Published.
Page generated: Fri Aug 15 11:43:40 2025

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