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Magnesium in PDB 8pib: Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex)

Enzymatic activity of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex)

All present enzymatic activity of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex):
2.7.7.6;

Other elements in 8pib:

The structure of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex) (pdb code 8pib). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex), PDB code: 8pib:

Magnesium binding site 1 out of 1 in 8pib

Go back to Magnesium Binding Sites List in 8pib
Magnesium binding site 1 out of 1 in the Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Autoinhibited Rfah Bound to E. Coli Transcription Complex Paused at Ops Site (Encounter Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1502

b:104.5
occ:1.00
 OP1 R:U17 2.0 76.3 1.0
OD1 J:ASP460 2.1 90.8 1.0
OD1 J:ASP464 2.1 96.5 1.0
OD1 J:ASP462 2.1 91.2 1.0
O3' R:G16 2.1 64.5 1.0
P R:U17 2.5 76.1 1.0
CG J:ASP464 2.8 88.4 1.0
CG J:ASP460 2.9 91.9 1.0
OD2 J:ASP464 2.9 91.8 1.0
CG J:ASP462 3.0 88.3 1.0
OD2 J:ASP460 3.1 94.3 1.0
O5' R:U17 3.2 77.8 1.0
OD2 J:ASP462 3.3 91.7 1.0
C3' R:G16 3.3 58.7 1.0
O J:ASP460 3.7 91.3 1.0
C4' R:G16 3.7 64.8 1.0
OP2 R:U17 3.8 73.2 1.0
C5' R:G16 4.1 68.7 1.0
O2' R:G16 4.1 69.3 1.0
CB J:ASP460 4.2 85.1 1.0
CB J:ASP464 4.3 77.7 1.0
C J:ASP460 4.3 86.3 1.0
C2' R:G16 4.3 63.9 1.0
CB J:ASP462 4.4 83.1 1.0
N J:ASP462 4.5 79.3 1.0
N J:ASP460 4.5 88.9 1.0
N J:ASP464 4.5 83.2 1.0
CA J:ASP460 4.6 85.0 1.0
C J:ASP462 4.6 78.9 1.0
C5' R:U17 4.6 74.6 1.0
O J:ASP462 4.6 87.0 1.0
CA J:ASP462 4.7 78.1 1.0
CA J:ASP464 4.8 77.7 1.0
O5' R:G16 4.9 75.8 1.0

Reference:

P.K.Zuber, N.Said, T.Hilal, B.Wang, B.Loll, J.Gonzalez-Higueras, C.A.Ramirez-Sarmiento, G.A.Belogurov, I.Artsimovitch, M.C.Wahl, S.H.Knauer. Concerted Transformation of A Hyper-Paused Transcription Complex and Its Reinforcing Protein. Nat Commun V. 15 3040 2024.
ISSN: ESSN 2041-1723
PubMed: 38589445
DOI: 10.1038/S41467-024-47368-4
Page generated: Fri Aug 15 12:25:57 2025

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