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Magnesium in PDB 8q70: Trna Pseudouridine Synthase A Homodimer

Protein crystallography data

The structure of Trna Pseudouridine Synthase A Homodimer, PDB code: 8q70 was solved by M.Pacesa, B.E.Correia, E.D.Levy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.43 / 1.85
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.69, 61.69, 275.31, 90, 90, 120
R / Rfree (%) 19.6 / 21.6

Other elements in 8q70:

The structure of Trna Pseudouridine Synthase A Homodimer also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Trna Pseudouridine Synthase A Homodimer (pdb code 8q70). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Trna Pseudouridine Synthase A Homodimer, PDB code: 8q70:

Magnesium binding site 1 out of 1 in 8q70

Go back to Magnesium Binding Sites List in 8q70
Magnesium binding site 1 out of 1 in the Trna Pseudouridine Synthase A Homodimer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Trna Pseudouridine Synthase A Homodimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:34.6
occ:0.58
OD1 A:ASN199 2.0 29.4 1.0
O A:HOH423 2.1 44.1 1.0
O A:HOH429 2.1 44.1 1.0
CG A:ASN199 3.0 34.1 1.0
ND2 A:ASN199 3.5 36.2 1.0
O A:HOH494 4.1 40.8 1.0
O A:LEU198 4.2 31.8 1.0
ND1 A:HIS131 4.2 30.9 1.0
CB A:ASN199 4.2 36.0 1.0
O A:THR130 4.3 30.4 1.0
CA A:ASN199 4.5 31.1 1.0
C A:LEU198 4.8 34.2 1.0
CA A:HIS131 4.8 31.9 1.0
N A:ASN199 4.9 32.1 1.0
CE1 A:HIS131 5.0 36.3 1.0

Reference:

H.Schweke, T.Levin, M.Pacesa, C.A.Goverde, P.Kumar, Y.Duhoo, L.J.Dornfeld, B.Dubreuil, S.Georgeon, D.N.Woolfson, B.E.Correia, S.Dey, E.D.Levy. An Atlas of Protein Homo-Oligomerization Across Domains of Life To Be Published.
Page generated: Fri Oct 4 16:39:34 2024

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