Magnesium in PDB 8q76: Copper-Transporting Atpase HMA4 in E2P State with Bef

The structure of Copper-Transporting Atpase HMA4 in E2P State with Bef also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Copper-Transporting Atpase HMA4 in E2P State with Bef (pdb code 8q76). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Copper-Transporting Atpase HMA4 in E2P State with Bef, PDB code: 8q76:

Magnesium binding site 1 out of 1 in the Copper-Transporting Atpase HMA4 in E2P State with Bef


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Copper-Transporting Atpase HMA4 in E2P State with Bef within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:138.5 occ:1.00 OD2 A:BFD641 1.9 20.0 1.0 OD2 A:ASP848 2.0 158.1 1.0 F2 A:BFD641 2.4 20.0 1.0 CG2 A:THR643 2.5 183.1 1.0 CG A:ASP848 2.7 157.9 1.0 OD1 A:ASP848 2.8 158.0 1.0 CG A:BFD641 2.9 20.0 1.0 O A:THR643 3.2 183.2 1.0 C A:THR643 3.2 182.9 1.0 BE A:BFD641 3.3 20.0 1.0 N A:THR643 3.3 182.5 1.0 OD1 A:BFD641 3.4 20.0 1.0 CA A:THR643 3.5 182.9 1.0 CB A:THR643 3.5 183.4 1.0 F3 A:BFD641 3.8 20.0 1.0 N A:GLY644 3.9 161.0 1.0 OG1 A:THR645 4.1 155.5 1.0 N A:LYS642 4.2 158.2 1.0 CB A:ASP848 4.2 157.5 1.0 CB A:BFD641 4.2 20.0 1.0 C A:LYS642 4.3 159.2 1.0 OD2 A:ASP852 4.3 162.6 1.0 OG1 A:THR643 4.5 183.9 1.0 CA A:GLY644 4.5 160.8 1.0 F1 A:BFD641 4.6 20.0 1.0 C A:BFD641 4.6 20.0 1.0 N A:THR645 4.7 154.9 1.0 O A:GLY481 4.8 183.6 1.0 C A:GLY644 4.8 160.5 1.0 CA A:LYS642 4.9 158.6 1.0

Z.Guo, F.Oradd, V.Bagenholm, C.Gronberg, J.F.Ma, P.Ott, Y.Wang, M.Andersson, P.A.Pedersen, K.Wang, P.Gourdon. Diverse Roles of the Metal Binding Domains and Transport Mechanism of Copper Transporting P-Type Atpases. Nat Commun V. 15 2690 2024.
ISSN: ESSN 2041-1723
PubMed: 38538615
DOI: 10.1038/S41467-024-47001-4