Magnesium in PDB 8q82: Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside

The structure of Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside, PDB code: 8q82 was solved by F.Melicher, J.Houser, E.Paulenova, M.Wimmerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.46 / 1.95
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	70.013, 82.859, 70.3, 90, 105.36, 90
R / Rfree (%)	20.5 / 24

The structure of Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Magnesium atom in the Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside (pdb code 8q82). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside, PDB code: 8q82:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:38.4 occ:1.00 CL A:CL404 2.1 51.0 1.0 ND2 A:ASN221 2.8 36.2 1.0 CA A:ASN221 3.5 29.0 1.0 OG A:SER219 3.7 26.6 1.0 CG A:ASN221 3.8 39.6 1.0 CB A:ASN221 3.8 32.2 1.0 CB A:ALA200 4.0 25.1 1.0 N A:ASN221 4.3 27.1 1.0 C A:ASN221 4.5 29.9 1.0 OD2 A:ASP198 4.6 29.7 1.0 CB A:SER219 4.7 27.4 1.0 N A:GLY222 4.9 26.6 1.0 OD1 A:ASN221 4.9 39.5 1.0

Magnesium binding site 2 out of 2 in the Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Photorhabdus Laumondii Lectin PLL4 in Complex with Alpha-Methyl- Fucoside within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg403 b:38.5 occ:1.00 CL B:CL402 2.1 52.6 1.0 O B:HOH522 2.6 23.3 1.0 O B:HOH532 4.1 24.4 1.0 OD2 B:ASP103 4.2 26.8 1.0 CG B:ASP103 5.0 28.5 1.0

E.Paulenova, P.Dobes, F.Melicher, J.Houser, L.Faltinek, N.Kodakov, L.Kononov, P.Hyrsl, M.Wimmerova. The Insight Into the Biology of Five Homologous Lectins Produced By the Entomopathogenic Bacterium and Nematode Symbiont Photorhabdus Laumondii To Be Published.