Magnesium in PDB 8rbf: Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex

The binding sites of Magnesium atom in the Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex (pdb code 8rbf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex, PDB code: 8rbf:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1901 b:139.0 occ:1.00 O3B A:ADP1902 3.0 173.8 1.0 OD1 A:ASN216 4.0 155.8 1.0 O1A A:ADP1902 4.1 173.8 1.0 CG A:ASN216 4.1 155.8 1.0 PB A:ADP1902 4.3 173.8 1.0 ND2 A:ASN216 4.4 155.8 1.0 ND2 A:ASN208 4.4 163.0 1.0 CB A:ASN216 4.6 155.8 1.0 O3A A:ADP1902 4.6 173.8 1.0 O A:ASN216 4.7 155.8 1.0 O1B A:ADP1902 4.7 173.8 1.0 OG A:SER165 4.9 175.5 1.0

Magnesium binding site 2 out of 4 in the Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:118.3 occ:1.00 O2B B:ADP401 3.2 128.8 1.0 O2A B:ADP401 3.4 128.8 1.0 NE2 B:GLN138 3.9 112.1 1.0 OD1 B:ASP155 4.0 127.5 1.0 OE1 B:GLN138 4.0 112.1 1.0 PB B:ADP401 4.1 128.8 1.0 O3A B:ADP401 4.1 128.8 1.0 CD B:GLN138 4.2 112.1 1.0 O3B B:ADP401 4.2 128.8 1.0 OD2 B:ASP12 4.3 142.4 1.0 PA B:ADP401 4.4 128.8 1.0 OD2 B:ASP155 4.4 127.5 1.0 CA B:GLY157 4.5 120.2 1.0 CG2 B:VAL340 4.6 124.6 1.0 CA B:GLY302 4.6 130.5 1.0 CG B:ASP155 4.7 127.5 1.0 OD1 B:ASP12 4.7 142.4 1.0 CG B:ASP12 4.8 142.4 1.0 NZ B:LYS19 4.9 133.8 1.0

Magnesium binding site 3 out of 4 in the Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:133.4 occ:1.00 O2B C:ADP401 3.2 141.8 1.0 O2A C:ADP401 3.3 141.8 1.0 OD2 C:ASP154 3.8 132.6 1.0 OD1 C:ASP154 4.0 132.6 1.0 O3A C:ADP401 4.0 141.8 1.0 PB C:ADP401 4.0 141.8 1.0 O3B C:ADP401 4.2 141.8 1.0 PA C:ADP401 4.2 141.8 1.0 CG C:ASP154 4.3 132.6 1.0 OD2 C:ASP11 4.3 155.6 1.0 CA C:GLY156 4.4 134.3 1.0 CG2 C:VAL339 4.5 142.0 1.0 CA C:GLY301 4.6 141.2 1.0 OD1 C:ASP11 4.7 155.6 1.0 NZ C:LYS18 4.8 146.6 1.0 CD C:GLN137 4.9 138.2 1.0 CG C:ASP11 4.9 155.6 1.0 OE1 C:GLN137 4.9 138.2 1.0 NE2 C:GLN137 5.0 138.2 1.0

Magnesium binding site 4 out of 4 in the Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of the Post-Powerstroke Actomyosin-5A Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:143.4 occ:1.00 O2B D:ADP401 3.1 139.6 1.0 O2A D:ADP401 3.4 139.6 1.0 OD1 D:ASP154 4.0 136.7 1.0 PB D:ADP401 4.0 139.6 1.0 O3B D:ADP401 4.2 139.6 1.0 O3A D:ADP401 4.2 139.6 1.0 OD2 D:ASP11 4.3 144.5 1.0 PA D:ADP401 4.3 139.6 1.0 OD2 D:ASP154 4.5 136.7 1.0 CA D:GLY156 4.5 135.1 1.0 CG2 D:VAL339 4.6 128.9 1.0 OD1 D:ASP11 4.6 144.5 1.0 CA D:GLY301 4.7 134.9 1.0 CG D:ASP154 4.7 136.7 1.0 NZ D:LYS18 4.8 128.0 1.0 CG D:ASP11 4.8 144.5 1.0 CD D:GLN137 4.9 127.9 1.0 OE1 D:GLN137 4.9 127.9 1.0 NE2 D:GLN137 4.9 127.9 1.0 O1A D:ADP401 5.0 139.6 1.0

D.P.Klebl, S.N.Mcmillan, C.Risi, E.Forgacs, B.Virok, J.L.Atherton, M.Stofella, D.A.Winkelmann, F.Sobott, V.E.Galkin, P.J.Knight, S.P.Muench, C.A.Scarff, H.D.White. Swinging Lever Mechanism of Myosin Directly Demonstrated By Time-Resolved Cryoem To Be Published.