Magnesium in PDB 8rbo: Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation

Enzymatic activity of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation

All present enzymatic activity of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation:
2.7.7.6;

Other elements in 8rbo:

The structure of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation also contains other interesting chemical elements:

Zinc

(Zn)

5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation (pdb code 8rbo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation, PDB code: 8rbo:

Magnesium binding site 1 out of 1 in 8rbo

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Magnesium Binding Sites List in 8rbo

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Pyrococcus Furiosus Apo Form Rna Polymerase Contracted Clamp Conformation within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg1002 b:30.0 occ:1.00	OD1	A:ASP462	2.1	0.8	1.0
	OD1	A:ASP458	2.2	0.8	1.0
	OD1	A:ASP460	2.4	0.8	1.0
	CG	A:ASP458	2.9	0.8	1.0
	CG	A:ASP462	2.9	0.8	1.0
	OD2	A:ASP458	3.0	0.8	1.0
	OD2	A:ASP462	3.1	0.8	1.0
	CG	A:ASP460	3.2	0.8	1.0
	OD2	A:ASP460	3.3	0.8	1.0
	O	A:ASP458	4.1	0.8	1.0
	CB	A:ASP462	4.3	0.8	1.0
	CB	A:ASP458	4.4	0.8	1.0
	N	A:ASP458	4.7	0.8	1.0
	CB	A:ASP460	4.7	0.8	1.0
	NH2	A:ARG423	4.7	0.7	1.0
	N	A:ASP462	4.7	0.8	1.0
	C	A:ASP458	4.8	0.8	1.0
	CA	A:ASP458	4.9	0.8	1.0
	CA	A:ASP462	4.9	0.8	1.0

Reference:

D.M.Tarau, F.Grunberger, M.Pilsl, R.Reichelt, F.B.Heiss, S.Koenig, H.Urlaub, W.Hausner, C.Engel, D.Grohmann. Structural Basis of Archaeal Rna Polymerase Transcription Elongation and SPT4/5 Recruitment Nucleic Acids Res. 2024.
ISSN: ESSN 1362-4962

Page generated: Fri Aug 15 13:56:22 2025

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