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Magnesium in PDB 8rix: Crystal Structure of Chloroplast Ftsy From Arabidopsis Thaliana in Complex with the Alarmone Ppgpp

Protein crystallography data

The structure of Crystal Structure of Chloroplast Ftsy From Arabidopsis Thaliana in Complex with the Alarmone Ppgpp, PDB code: 8rix was solved by L.Czech, G.Bange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.64 / 1.99
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 138.28, 37.07, 59.82, 90, 110.63, 90
R / Rfree (%) 21.9 / 27.6

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Chloroplast Ftsy From Arabidopsis Thaliana in Complex with the Alarmone Ppgpp (pdb code 8rix). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Chloroplast Ftsy From Arabidopsis Thaliana in Complex with the Alarmone Ppgpp, PDB code: 8rix:

Magnesium binding site 1 out of 1 in 8rix

Go back to Magnesium Binding Sites List in 8rix
Magnesium binding site 1 out of 1 in the Crystal Structure of Chloroplast Ftsy From Arabidopsis Thaliana in Complex with the Alarmone Ppgpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Chloroplast Ftsy From Arabidopsis Thaliana in Complex with the Alarmone Ppgpp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:30.7
occ:1.00
O A:HOH539 2.0 28.9 1.0
O A:HOH526 2.1 29.6 1.0
O A:HOH516 2.1 29.7 1.0
O2B A:G4P401 2.1 28.4 1.0
OG1 A:THR178 2.1 26.9 1.0
O A:HOH536 2.3 32.8 1.0
PB A:G4P401 3.2 27.1 1.0
CB A:THR178 3.3 28.0 1.0
O1B A:G4P401 3.4 29.3 1.0
OD2 A:ASP201 3.9 41.3 1.0
N A:THR178 3.9 24.5 1.0
OD2 A:ASP254 3.9 30.7 1.0
OE1 A:GLN210 4.0 46.6 1.0
O A:HOH506 4.0 35.1 1.0
O2A A:G4P401 4.1 36.0 1.0
CA A:THR178 4.2 25.9 1.0
O3B A:G4P401 4.2 28.0 1.0
OD1 A:ASP254 4.3 32.2 1.0
CG2 A:THR178 4.3 32.5 1.0
O3A A:G4P401 4.3 27.5 1.0
CG A:ASP254 4.5 32.3 1.0
PA A:G4P401 4.5 28.0 1.0
CE A:LYS177 4.6 28.6 1.0
OD1 A:ASN173 4.6 34.4 1.0
NZ A:LYS177 4.6 31.7 1.0
O1A A:G4P401 4.6 31.5 1.0
CB A:LYS177 4.7 24.8 1.0
CD A:GLN210 4.9 44.3 1.0
CG A:ASP201 4.9 41.4 1.0

Reference:

L.Czech, G.Bange. Structure of Chloroplast Ftsy From Arabidopsis Thaliana in Complex with the Alarmone Ppgpp To Be Published.
Page generated: Sat Feb 8 20:43:48 2025

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