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Magnesium in PDB 8sdw: Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue

Enzymatic activity of Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue

All present enzymatic activity of Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue:
3.6.5.2;

Protein crystallography data

The structure of Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue, PDB code: 8sdw was solved by E.M.Rosenberg Jr., P.A.Randazzo, L.Esser, D.Xia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.24 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.654, 55.015, 78.472, 90, 90, 90
R / Rfree (%) 19 / 21

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue (pdb code 8sdw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue, PDB code: 8sdw:

Magnesium binding site 1 out of 1 in 8sdw

Go back to Magnesium Binding Sites List in 8sdw
Magnesium binding site 1 out of 1 in the Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:12.6
occ:1.00
 O A:HOH453 2.0 12.9 1.0
O A:HOH334 2.1 13.5 1.0
O A:HOH471 2.1 14.9 1.0
OG1 A:THR31 2.2 11.9 1.0
O2B A:G3D201 2.2 14.8 1.0
O A:HOH341 2.2 11.7 1.0
PB A:G3D201 3.3 14.8 1.0
CB A:THR31 3.3 14.0 1.0
O3B A:G3D201 3.4 14.8 1.0
O A:HOH305 4.0 21.9 1.0
N A:THR31 4.1 11.2 1.0
OE1 A:GLU54 4.1 17.4 1.0
O A:HOH549 4.1 30.0 1.0
OD1 A:ASP67 4.2 15.4 1.0
O2A A:G3D201 4.2 14.8 1.0
O A:HOH499 4.2 25.9 1.0
CA A:THR31 4.2 10.5 1.0
O A:HOH556 4.3 27.4 1.0
CG2 A:THR31 4.3 15.4 1.0
O1B A:G3D201 4.3 14.8 1.0
O A:HOH563 4.3 34.7 1.0
O3A A:G3D201 4.3 14.8 1.0
OD2 A:ASP67 4.5 19.8 1.0
PA A:G3D201 4.6 14.8 1.0
CD A:GLU54 4.8 24.4 1.0
CG A:ASP67 4.8 15.1 1.0
O1A A:G3D201 4.9 14.8 1.0
OE2 A:GLU54 4.9 37.0 1.0
O A:HOH440 5.0 21.5 1.0

Reference:

E.M.Rosenberg Jr., P.A.Randazzo, L.Esser, D.Xia. Crystal Structure of the Non-Myristoylated Mutant [L8K]ARF1 in Complex with A Gdp Analogue (Casp Target) To Be Published.
Page generated: Fri Aug 15 15:31:46 2025

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