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Magnesium in PDB 8sld: Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Apo)

Protein crystallography data

The structure of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Apo), PDB code: 8sld was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.98 / 2.85
Space group I 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 190.848, 190.848, 190.848, 90, 90, 90
R / Rfree (%) 23.3 / 26.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Apo) (pdb code 8sld). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Apo), PDB code: 8sld:

Magnesium binding site 1 out of 1 in 8sld

Go back to Magnesium Binding Sites List in 8sld
Magnesium binding site 1 out of 1 in the Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Apo)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Apo) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:89.7
occ:1.00
O A:VAL60 2.0 68.2 1.0
O A:VAL54 2.1 76.9 1.0
O A:ARG57 2.3 81.7 1.0
C A:VAL54 3.2 73.7 1.0
C A:VAL60 3.3 76.6 1.0
C A:ARG57 3.5 76.0 1.0
CA A:VAL54 4.0 72.7 1.0
N A:VAL60 4.1 84.1 1.0
N A:THR55 4.1 67.4 1.0
CA A:THR55 4.1 83.2 1.0
CA A:VAL60 4.2 74.3 1.0
CG1 A:VAL54 4.2 73.1 1.0
N A:VAL61 4.2 72.5 1.0
CA A:GLU58 4.3 97.4 1.0
N A:GLU58 4.3 80.6 1.0
CA A:VAL61 4.3 70.3 1.0
C A:GLU58 4.4 83.0 1.0
N A:ARG57 4.4 78.0 1.0
O A:GLU58 4.4 90.0 1.0
CG1 A:VAL61 4.4 88.5 1.0
C A:THR55 4.5 77.2 1.0
CA A:ARG57 4.5 76.7 1.0
CB A:VAL60 4.6 75.3 1.0
O A:THR55 4.6 79.2 1.0
CB A:VAL54 4.8 67.9 1.0
N A:ASP59 4.9 91.0 1.0
CB A:ARG57 5.0 83.8 1.0

Reference:

S.Lovell, L.Liu, K.P.Battaile, S.Seibold. Crystal Structure of Glycine Trna Ligase From Mycobacterium Thermoresistibile (Apo) To Be Published.
Page generated: Fri Aug 15 15:47:38 2025

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