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Magnesium in PDB 8ti3: Yeast Actin Wild Type

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Yeast Actin Wild Type (pdb code 8ti3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Yeast Actin Wild Type, PDB code: 8ti3:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in 8ti3

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Magnesium binding site 1 out of 5 in the Yeast Actin Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Actin Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:63.5
occ:1.00
 O3B A:ADP401 1.8 143.4 1.0
PB A:ADP401 3.1 143.4 1.0
NZ A:LYS18 3.6 151.0 1.0
CA A:GLY13 3.7 148.2 1.0
O2B A:ADP401 3.7 143.4 1.0
OD2 A:ASP11 3.8 153.2 1.0
NE2 A:GLN137 3.9 140.1 1.0
O1B A:ADP401 4.1 143.4 1.0
O2A A:ADP401 4.1 143.4 1.0
O3A A:ADP401 4.1 143.4 1.0
CG2 A:VAL339 4.4 140.5 1.0
PA A:ADP401 4.4 143.4 1.0
O1A A:ADP401 4.4 143.4 1.0
N A:GLY13 4.5 148.2 1.0
CE A:LYS18 4.6 151.0 1.0
CG A:ASP11 4.7 153.2 1.0
CB A:VAL339 4.7 140.5 1.0
CB A:ASP11 4.7 153.2 1.0
CD A:GLN137 4.8 140.1 1.0
OD2 A:ASP154 4.8 131.5 1.0
CG1 A:VAL339 4.8 140.5 1.0
C A:GLY13 4.8 148.2 1.0
N A:SER14 4.9 148.7 1.0

Magnesium binding site 2 out of 5 in 8ti3

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Magnesium binding site 2 out of 5 in the Yeast Actin Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast Actin Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:63.5
occ:1.00
 O3B B:ADP401 1.8 143.4 1.0
PB B:ADP401 3.1 143.4 1.0
NZ B:LYS18 3.6 151.0 1.0
O2B B:ADP401 3.7 143.4 1.0
CA B:GLY13 3.7 148.2 1.0
OD2 B:ASP11 3.8 153.2 1.0
NE2 B:GLN137 3.9 140.1 1.0
O1B B:ADP401 4.1 143.4 1.0
O2A B:ADP401 4.1 143.4 1.0
O3A B:ADP401 4.1 143.4 1.0
CG2 B:VAL339 4.4 140.5 1.0
PA B:ADP401 4.4 143.4 1.0
O1A B:ADP401 4.4 143.4 1.0
N B:GLY13 4.5 148.2 1.0
CE B:LYS18 4.6 151.0 1.0
CG B:ASP11 4.7 153.2 1.0
CB B:VAL339 4.7 140.5 1.0
CB B:ASP11 4.7 153.2 1.0
CD B:GLN137 4.8 140.1 1.0
OD2 B:ASP154 4.8 131.5 1.0
CG1 B:VAL339 4.8 140.5 1.0
C B:GLY13 4.8 148.2 1.0
N B:SER14 4.9 148.7 1.0

Magnesium binding site 3 out of 5 in 8ti3

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Magnesium binding site 3 out of 5 in the Yeast Actin Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast Actin Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:63.5
occ:1.00
 O3B C:ADP401 1.8 143.4 1.0
PB C:ADP401 3.1 143.4 1.0
NZ C:LYS18 3.6 151.0 1.0
CA C:GLY13 3.7 148.2 1.0
O2B C:ADP401 3.7 143.4 1.0
OD2 C:ASP11 3.8 153.2 1.0
NE2 C:GLN137 3.9 140.1 1.0
O1B C:ADP401 4.1 143.4 1.0
O2A C:ADP401 4.1 143.4 1.0
O3A C:ADP401 4.1 143.4 1.0
CG2 C:VAL339 4.4 140.5 1.0
PA C:ADP401 4.4 143.4 1.0
O1A C:ADP401 4.4 143.4 1.0
N C:GLY13 4.5 148.2 1.0
CE C:LYS18 4.6 151.0 1.0
CG C:ASP11 4.7 153.2 1.0
CB C:VAL339 4.7 140.5 1.0
CB C:ASP11 4.7 153.2 1.0
CD C:GLN137 4.8 140.1 1.0
OD2 C:ASP154 4.8 131.5 1.0
CG1 C:VAL339 4.8 140.5 1.0
C C:GLY13 4.8 148.2 1.0
N C:SER14 4.9 148.7 1.0

Magnesium binding site 4 out of 5 in 8ti3

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Magnesium binding site 4 out of 5 in the Yeast Actin Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast Actin Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:63.5
occ:1.00
 O3B D:ADP401 1.8 143.4 1.0
PB D:ADP401 3.1 143.4 1.0
NZ D:LYS18 3.6 151.0 1.0
CA D:GLY13 3.7 148.2 1.0
O2B D:ADP401 3.7 143.4 1.0
OD2 D:ASP11 3.8 153.2 1.0
NE2 D:GLN137 3.9 140.1 1.0
O1B D:ADP401 4.1 143.4 1.0
O2A D:ADP401 4.1 143.4 1.0
O3A D:ADP401 4.1 143.4 1.0
CG2 D:VAL339 4.4 140.5 1.0
PA D:ADP401 4.4 143.4 1.0
O1A D:ADP401 4.4 143.4 1.0
N D:GLY13 4.5 148.2 1.0
CE D:LYS18 4.6 151.0 1.0
CG D:ASP11 4.7 153.2 1.0
CB D:VAL339 4.7 140.5 1.0
CB D:ASP11 4.7 153.2 1.0
CD D:GLN137 4.8 140.1 1.0
OD2 D:ASP154 4.8 131.5 1.0
CG1 D:VAL339 4.8 140.5 1.0
C D:GLY13 4.8 148.2 1.0
N D:SER14 4.9 148.7 1.0

Magnesium binding site 5 out of 5 in 8ti3

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Magnesium binding site 5 out of 5 in the Yeast Actin Wild Type


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast Actin Wild Type within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:63.5
occ:1.00
 O3B E:ADP401 1.8 143.4 1.0
PB E:ADP401 3.1 143.4 1.0
NZ E:LYS18 3.6 151.0 1.0
CA E:GLY13 3.7 148.2 1.0
O2B E:ADP401 3.7 143.4 1.0
OD2 E:ASP11 3.8 153.2 1.0
NE2 E:GLN137 3.9 140.1 1.0
O1B E:ADP401 4.1 143.4 1.0
O2A E:ADP401 4.1 143.4 1.0
O3A E:ADP401 4.1 143.4 1.0
CG2 E:VAL339 4.4 140.5 1.0
PA E:ADP401 4.4 143.4 1.0
O1A E:ADP401 4.4 143.4 1.0
N E:GLY13 4.5 148.2 1.0
CE E:LYS18 4.6 151.0 1.0
CG E:ASP11 4.7 153.2 1.0
CB E:VAL339 4.7 140.5 1.0
CB E:ASP11 4.7 153.2 1.0
CD E:GLN137 4.8 140.1 1.0
OD2 E:ASP154 4.8 131.5 1.0
CG1 E:VAL339 4.8 140.5 1.0
C E:GLY13 4.8 148.2 1.0
N E:SER14 4.9 148.7 1.0

Reference:

N.Volkmann, D.Hanein. Yeast Actin Wild Type To Be Published.
Page generated: Fri Aug 15 16:22:12 2025

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