Magnesium in PDB 8tmd: Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A

The binding sites of Magnesium atom in the Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A (pdb code 8tmd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A, PDB code: 8tmd:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:13.5 occ:1.00 OD1 E:ASN314 3.4 29.6 1.0 OD1 A:ASN314 3.4 36.5 1.0 OD1 D:ASN314 3.5 36.0 1.0 O A:GLY312 4.0 23.4 1.0 O E:GLY312 4.1 23.3 1.0 ND2 D:ASN314 4.2 36.0 1.0 CG D:ASN314 4.2 36.0 1.0 OD1 C:ASN314 4.3 39.3 1.0 CG A:ASN314 4.3 36.5 1.0 ND2 A:ASN314 4.3 36.5 1.0 O B:GLY312 4.4 28.2 1.0 CG E:ASN314 4.4 29.6 1.0 O D:GLY312 4.5 28.4 1.0 ND2 E:ASN314 4.6 29.6 1.0 ND2 C:ASN314 4.6 39.3 1.0 O C:GLY312 4.8 29.1 1.0 CG C:ASN314 4.9 39.3 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:11.8 occ:1.00 CA C:GLY309 4.6 24.2 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Cora in Complex with Conformation-Specific Synthetic Antibody C18 and 100 Um MGCL2, State MG0.1-1A within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:12.1 occ:1.00 OD2 D:ASP175 3.4 13.9 1.0 OD1 D:ASP175 3.8 13.9 1.0 CE1 D:HIS257 3.9 8.1 1.0 CG D:ASP175 3.9 13.9 1.0 OD2 D:ASP253 3.9 10.5 1.0 OE2 E:GLU88 4.1 11.5 1.0 OH D:TYR171 4.1 14.8 1.0 OE1 E:GLU88 4.4 11.5 1.0 CA E:PRO14 4.5 16.5 1.0 CD E:GLU88 4.6 11.5 1.0 CB E:PRO14 4.7 16.5 1.0 ND1 D:HIS257 4.7 8.1 1.0 NE2 D:HIS257 4.7 8.1 1.0

S.K.Erramilli, K.Nosol, K.Pietrzak-Lichwa, T.Li, P.Dutka, J.Hou, M.Zhao, E.Perozo, A.A.Kossiakoff. Structural Basis For Cora Channel Gating Using Conformation-Specific Synthetic Antibodies To Be Published.