Magnesium in PDB 8u0j: Ddme in Complex with Guide and Target Dna

The binding sites of Magnesium atom in the Ddme in Complex with Guide and Target Dna (pdb code 8u0j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ddme in Complex with Guide and Target Dna, PDB code: 8u0j:

Magnesium binding site 1 out of 1 in the Ddme in Complex with Guide and Target Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ddme in Complex with Guide and Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:76.0 occ:1.00 OP1 B:DT3 2.2 75.0 1.0 OP2 B:DG1 2.4 79.7 1.0 P B:DT3 3.5 75.0 1.0 P B:DG1 3.6 79.7 1.0 OP3 B:DG1 3.6 79.7 1.0 OP2 B:DT3 4.0 75.0 1.0 O5' B:DT3 4.3 75.0 1.0 C5' B:DG1 4.3 79.7 1.0 O5' B:DG1 4.5 79.7 1.0 C5' B:DT3 4.6 75.0 1.0 NZ A:LYS405 4.6 60.9 1.0 O3' B:DT2 4.6 76.2 1.0 OP1 B:DG1 4.8 79.7 1.0 CE A:LYS405 5.0 60.9 1.0 OE2 A:GLU678 5.0 75.4 1.0

J.P.K.Bravo, D.A.Ramos, R.Fregoso Ocampo, C.Ingram, D.W.Taylor. Plasmid Targeting and Destruction By the Ddmde Bacterial Defence System. Nature 2024.
ISSN: ESSN 1476-4687
PubMed: 38740055
DOI: 10.1038/S41586-024-07515-9