Magnesium »
PDB 8tup-8u37 »
8u0p »
Magnesium in PDB 8u0p: Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break
Enzymatic activity of Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break
All present enzymatic activity of Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break, PDB code: 8u0p
was solved by
A.M.Kaminski,
L.C.Pedersen,
K.Bebenek,
T.A.Kunkel,
K.K.Chiruvella,
D.A.Ramsden,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 39.40 / 1.90 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 56.205, 60.068, 140.729, 90, 90, 90 |
| R / Rfree (%) | 17.2 / 19.3 |
Other elements in 8u0p:
The structure of Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break also contains other interesting chemical elements:
| Sodium | (Na) | 1 atom |
| Chlorine | (Cl) | 4 atoms |
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break
(pdb code 8u0p). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break, PDB code: 8u0p:
Jump to Magnesium binding site number: 1; 2;
In total 2 binding sites of Magnesium where determined in the Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break, PDB code: 8u0p:
Jump to Magnesium binding site number: 1; 2;
Magnesium binding site 1 out of 2 in 8u0p
Go back to
Magnesium Binding Sites List in 8u0p
Magnesium binding site 1 out
of 2 in the Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break within 5.0Å range:
|
Magnesium binding site 2 out of 2 in 8u0p
Go back to
Magnesium Binding Sites List in 8u0p
Magnesium binding site 2 out
of 2 in the Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Synaptic Complex of Human Dna Polymerase Lambda Dl Variant Engaged on A Noncomplementary Dna Double-Strand Break within 5.0Å range:
|
Reference:
A.M.Kaminski,
K.K.Chiruvella,
D.A.Ramsden,
K.Bebenek,
T.A.Kunkel,
L.C.Pedersen.
Dna Polymerase Lambda LOOP1 Variant Yields Unexpected Gain-of-Function Capabilities in Nonhomologous End-Joining. Dna Repair (Amst) V. 136 03645 2024.
ISSN: ISSN 1568-7856
PubMed: 38428373
DOI: 10.1016/J.DNAREP.2024.103645
Page generated: Fri Aug 15 16:45:47 2025
ISSN: ISSN 1568-7856
PubMed: 38428373
DOI: 10.1016/J.DNAREP.2024.103645
Last articles
Mn in 5ZE1Mn in 5ZE2
Mn in 5ZAC
Mn in 5Z30
Mn in 5Z2P
Mn in 5Z6W
Mn in 5Z5Y
Mn in 5Z5P
Mn in 5Z5N
Mn in 5Z5L
