Magnesium in PDB 8u2p: Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound)

Enzymatic activity of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound)

All present enzymatic activity of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound):
6.1.1.14;

Protein crystallography data

The structure of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound), PDB code: 8u2p was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	45.15 / 2.25
*Space group*	P 6₁ 2 2
*Cell size a, b, c (Å), α, β, γ (°)*	124.293, 124.293, 131.383, 90, 90, 120
*R / R_free (%)*	17.9 / 20.8

Other elements in 8u2p:

The structure of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) (pdb code 8u2p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound), PDB code: 8u2p:

Magnesium binding site 1 out of 1 in 8u2p

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Magnesium Binding Sites List in 8u2p

Magnesium binding site 1 out of 1 in the Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg508 b:33.2 occ:1.00	O	A:HOH658	2.1	44.4	1.0
	O	A:HOH634	2.1	45.1	1.0
	OE2	A:GLU282	2.2	50.4	1.0
	O1S	A:G5A501	2.3	48.4	1.0
	OE1	A:GLU282	2.4	62.9	1.0
	O	A:HOH669	2.5	40.0	1.0
	CD	A:GLU282	2.6	50.7	1.0
	O1	A:EDO507	2.8	62.2	1.0
	O2	A:EDO507	3.1	66.6	1.0
	C2	A:EDO507	3.2	57.1	1.0
	C1	A:EDO507	3.5	60.3	1.0
	S	A:G5A501	3.6	41.5	1.0
	O2S	A:G5A501	4.1	41.7	1.0
	CG	A:GLU282	4.1	52.5	1.0
	OD2	A:ASP268	4.2	50.3	1.0
	O	A:HOH655	4.3	47.6	1.0
	O	A:HOH684	4.5	34.3	1.0
	CE1	A:HIS254	4.5	56.0	1.0
	OD1	A:ASP268	4.5	44.3	1.0
	O5'	A:G5A501	4.5	38.9	1.0
	N3S	A:G5A501	4.7	38.1	1.0
	O3'	A:G5A501	4.7	43.0	1.0
	C3'	A:G5A501	4.7	46.0	1.0
	CG	A:ASP268	4.8	51.0	1.0
	NE2	A:HIS254	4.8	56.4	1.0

Reference:

S.Seibold, S.Lovell, K.P.Battaile, A.Derocher. Crystal Structure of Glycine--Trna Ligase From Mycobacterium Tuberculosis (G5A Bound) To Be Published.

Page generated: Fri Aug 15 16:46:46 2025

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