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Magnesium in PDB 8vcm: Crystal Structure of Rmcl-1 in Complex with Galactose

Protein crystallography data

The structure of Crystal Structure of Rmcl-1 in Complex with Galactose, PDB code: 8vcm was solved by A.Hernandez-Santoyo, J.Loera-Rubalcava, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.69 / 2.21
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.217, 41.094, 67.938, 90, 107.7, 90
R / Rfree (%) 18.4 / 20.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Rmcl-1 in Complex with Galactose (pdb code 8vcm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Rmcl-1 in Complex with Galactose, PDB code: 8vcm:

Magnesium binding site 1 out of 1 in 8vcm

Go back to Magnesium Binding Sites List in 8vcm
Magnesium binding site 1 out of 1 in the Crystal Structure of Rmcl-1 in Complex with Galactose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Rmcl-1 in Complex with Galactose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:48.4
occ:1.00
O A:HOH305 3.0 43.0 1.0
NE A:ARG84 3.7 45.5 1.0
CG A:ARG84 4.4 51.7 1.0
CD A:ARG84 4.4 44.1 1.0
CZ A:ARG84 4.5 44.2 1.0
NH2 A:ARG84 4.5 43.1 1.0
OD2 A:ASP45 4.8 51.9 1.0
CD2 A:TYR53 5.0 44.8 1.0

Reference:

J.Loera-Rubalcava, E.Garcia-Maldonado, P.Cano-Sanchez, A.Rodriguez-Romero, A.Quintero-Martinez, M.L.Macias-Rubalcava, G.Espinosa-Perez, A.Hernandez-Santoyo. Insights Into A Mytilectin From Mytilus Californianus: Study of Its Unique Galactoside Interactions, Oligomerization Patterns, and Antifungal Activity To Be Published.
Page generated: Fri Aug 15 17:35:25 2025

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