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Magnesium in PDB 8vot: The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid

Protein crystallography data

The structure of The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid, PDB code: 8vot was solved by M.N.Podgorski, S.G.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.20 / 1.53
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 41.227, 51.405, 79.502, 90, 91.91, 90
R / Rfree (%) 13.7 / 16.8

Other elements in 8vot:

The structure of The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid (pdb code 8vot). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid, PDB code: 8vot:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8vot

Go back to Magnesium Binding Sites List in 8vot
Magnesium binding site 1 out of 2 in the The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg504

b:19.3
occ:1.00
O A:HOH997 2.0 23.0 1.0
O A:HOH1004 2.1 22.4 1.0
O A:HOH651 2.1 19.5 1.0
OD1 A:ASN214 4.0 17.5 1.0
O A:HOH659 4.3 29.4 1.0
NZ A:LYS167 4.3 18.8 1.0

Magnesium binding site 2 out of 2 in 8vot

Go back to Magnesium Binding Sites List in 8vot
Magnesium binding site 2 out of 2 in the The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Wild-Type CYP199A4 Bound to 4- (Hydroxymethyl)Benzoic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg505

b:27.4
occ:1.00
O A:HOH1037 2.1 35.6 1.0
O A:HOH1123 2.2 37.4 1.0
O A:HOH1049 2.2 30.1 1.0
O A:HOH663 2.3 21.5 1.0
O A:HOH1040 4.0 20.6 1.0
O A:HOH1009 4.2 24.4 1.0
OE1 A:GLN203 4.3 19.7 1.0
O A:TRP91 4.4 14.6 1.0
O A:HOH789 4.4 25.3 1.0
O A:HOH921 4.8 26.9 1.0
O A:HOH757 4.8 17.5 1.0

Reference:

M.N.Podgorski, S.G.Bell. The Crystal Structure of Wild-Type CYP199A4 Bound to 4-(Hydroxymethyl)Benzoic Acid To Be Published.
Page generated: Sat Aug 23 05:37:38 2025

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