Magnesium in PDB 8vwl: Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form

The structure of Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form, PDB code: 8vwl was solved by M.Lee, A.T.Smith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	77.57 / 3.67
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	48.348, 84.118, 158.028, 76.17, 83.91, 74.51
R / Rfree (%)	20.9 / 27

The binding sites of Magnesium atom in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form (pdb code 8vwl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form, PDB code: 8vwl:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:137.5 occ:1.00 NH1 A:ARG230 4.1 163.2 1.0 OE2 A:GLU189 4.5 143.5 1.0 OE1 A:GLU189 5.0 150.6 1.0

Magnesium binding site 2 out of 6 in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:118.1 occ:1.00 OE1 A:GLU221 2.9 188.6 1.0 NH1 A:ARG224 3.4 170.7 1.0 OE2 A:GLU221 3.4 188.3 1.0 CD A:GLU221 3.5 188.6 1.0 CD A:ARG224 4.0 170.7 1.0 CZ A:ARG224 4.5 164.7 1.0 NE A:ARG224 4.7 165.3 1.0 CG A:GLU221 5.0 188.0 1.0

Magnesium binding site 3 out of 6 in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:112.0 occ:1.00 OD2 B:ASP239 2.5 152.0 1.0 OD1 B:ASP237 3.4 133.3 1.0 CG B:ASP239 3.8 149.9 1.0 OD2 B:ASP237 4.1 132.7 1.0 CB A:TYR60 4.1 105.4 1.0 CG B:ASP237 4.1 131.8 1.0 OD1 B:ASP239 4.5 150.7 1.0 CB A:ALA61 4.5 100.8 1.0 CB B:ASP239 4.8 144.5 1.0 N A:ALA61 4.9 105.1 1.0 C A:TYR60 5.0 104.4 1.0

Magnesium binding site 4 out of 6 in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:141.9 occ:1.00 OD2 C:ASP72 2.8 112.1 1.0 CG C:ASP72 3.9 111.8 1.0 OE1 C:GLU73 4.1 133.0 1.0 CB C:ASP72 4.4 118.4 1.0 CG2 C:VAL37 4.9 160.7 1.0 OD1 C:ASP72 5.0 109.5 1.0

Magnesium binding site 5 out of 6 in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg302 b:110.0 occ:1.00 OE1 C:GLU233 3.8 147.7 1.0 OE2 C:GLU189 3.9 165.2 1.0 NH1 C:ARG230 4.4 164.0 1.0 CD C:GLU233 4.8 153.9 1.0

Magnesium binding site 6 out of 6 in the Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Vibrio Cholerae Nfeob in the Apo Form within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg301 b:135.8 occ:1.00 OE1 D:GLU221 3.3 233.4 1.0 CD D:GLU221 4.3 242.4 1.0 OE2 D:GLU221 4.6 248.0 1.0 NE2 H:GLN225 5.0 201.7 1.0

M.Lee, K.Magante, C.Gomez-Garzon, S.M.Payne, A.T.Smith. Structural Determinants of Vibrio Cholerae Feob Nucleotide Promiscuity. J.Biol.Chem. V. 300 07663 2024.
ISSN: ESSN 1083-351X
PubMed: 39128725
DOI: 10.1016/J.JBC.2024.107663