Atomistry » Magnesium » PDB 8vuf-8w4v » 8w21
Atomistry »
  Magnesium »
    PDB 8vuf-8w4v »
      8w21 »

Magnesium in PDB 8w21: Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)

Enzymatic activity of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)

All present enzymatic activity of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form):
4.2.1.11;

Protein crystallography data

The structure of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form), PDB code: 8w21 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.35 / 2.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 140.602, 140.602, 409.05, 90, 90, 90
R / Rfree (%) 17.5 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) (pdb code 8w21). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form), PDB code: 8w21:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 8w21

Go back to Magnesium Binding Sites List in 8w21
Magnesium binding site 1 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:43.2
occ:1.00
 OD2 A:ASP310 2.2 38.5 1.0
O A:HOH615 2.4 36.1 1.0
OE2 A:GLU283 2.4 31.5 1.0
OD2 A:ASP244 2.6 37.9 1.0
CG A:ASP310 3.3 37.1 1.0
O A:HOH622 3.3 39.2 1.0
CD A:GLU283 3.5 36.4 1.0
CG A:ASP244 3.5 35.7 1.0
CB A:ASP310 3.8 39.2 1.0
OD1 A:ASP244 3.8 33.7 1.0
NZ A:LYS335 3.9 37.7 1.0
NZ A:LYS386 4.0 38.1 1.0
O A:HOH688 4.2 50.4 1.0
OE1 A:GLU283 4.3 40.3 1.0
OD1 A:ASP310 4.3 37.8 1.0
OD2 A:ASP284 4.4 31.6 1.0
OE2 A:GLU166 4.4 51.5 1.0
CG A:GLU283 4.5 34.1 1.0
NE2 A:GLN165 4.5 43.4 1.0
CD2 A:LEU333 4.6 36.3 1.0
O1 A:PO4501 4.7 52.3 1.0
CB A:ASP244 4.8 35.6 1.0
CE A:LYS386 4.9 37.4 1.0
CE A:LYS335 5.0 27.9 1.0

Magnesium binding site 2 out of 7 in 8w21

Go back to Magnesium Binding Sites List in 8w21
Magnesium binding site 2 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:59.8
occ:1.00
 OD2 B:ASP310 2.2 56.1 1.0
OE2 B:GLU283 2.4 49.1 1.0
O B:HOH671 2.4 45.9 1.0
OD2 B:ASP244 2.9 44.9 1.0
CG B:ASP310 3.3 53.5 1.0
CD B:GLU283 3.6 45.1 1.0
CG B:ASP244 3.8 40.6 1.0
CB B:ASP310 3.9 49.9 1.0
NZ B:LYS386 4.1 42.2 1.0
OD1 B:ASP244 4.1 34.9 1.0
NZ B:LYS335 4.1 41.2 1.0
OE1 B:GLU283 4.3 40.4 1.0
OE2 B:GLU166 4.3 60.1 1.0
OD1 B:ASP310 4.3 48.0 1.0
OD2 B:ASP284 4.4 51.7 1.0
CD2 B:LEU333 4.5 40.3 1.0
CG B:GLU283 4.6 38.5 1.0
OE1 B:GLN165 4.7 47.9 1.0
CE B:LYS386 5.0 45.9 1.0

Magnesium binding site 3 out of 7 in 8w21

Go back to Magnesium Binding Sites List in 8w21
Magnesium binding site 3 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg504

b:47.2
occ:1.00
 OD1 C:ASP244 2.6 37.7 1.0
OD2 C:ASP284 2.9 38.2 1.0
OD2 C:ASP244 2.9 41.8 1.0
OD2 C:ASP310 3.1 55.4 1.0
OE2 C:GLU283 3.1 44.2 1.0
CG C:ASP244 3.2 38.5 1.0
O C:HOH669 3.5 49.6 1.0
CG C:ASP284 3.7 38.9 1.0
CA C:ALA246 3.7 37.4 1.0
CB C:ALA246 3.8 37.6 1.0
CB C:ASP284 3.8 34.0 1.0
CD C:GLU283 4.0 46.2 1.0
O C:HOH635 4.0 35.3 1.0
CG C:ASP310 4.0 48.6 1.0
OD2 C:ASP311 4.1 54.9 1.0
N C:ALA246 4.1 37.1 1.0
CB C:ASP310 4.1 47.4 1.0
CG C:GLU283 4.2 34.7 1.0
O C:HOH664 4.6 39.8 1.0
OE1 C:GLN165 4.6 46.5 1.0
CG C:ASP311 4.7 50.4 1.0
CB C:ASP244 4.7 34.9 1.0
OD1 C:ASP284 4.9 33.9 1.0
OE1 C:GLU283 5.0 46.5 1.0

Magnesium binding site 4 out of 7 in 8w21

Go back to Magnesium Binding Sites List in 8w21
Magnesium binding site 4 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg504

b:61.2
occ:1.00
 OD2 D:ASP310 2.7 47.7 1.0
OD2 D:ASP244 2.9 38.2 1.0
O D:HOH630 2.9 38.6 1.0
OE2 D:GLU283 3.1 41.6 1.0
NZ D:LYS386 3.6 45.4 1.0
CG D:ASP310 3.7 51.3 1.0
OE2 D:GLU166 3.9 59.0 1.0
NZ D:LYS335 3.9 35.5 1.0
CG D:ASP244 4.0 34.6 1.0
CD D:GLU283 4.3 39.4 1.0
OD1 D:ASP310 4.4 47.6 1.0
OD1 D:ASP244 4.4 35.9 1.0
NE2 D:GLN165 4.4 41.5 1.0
CE D:LYS386 4.5 45.5 1.0
O4 D:PO4502 4.5 44.3 1.0
CD2 D:LEU333 4.5 36.6 1.0
CB D:ASP310 4.6 46.2 1.0
OE1 D:GLU283 4.8 43.8 1.0
CE D:LYS335 4.9 35.7 1.0

Magnesium binding site 5 out of 7 in 8w21

Go back to Magnesium Binding Sites List in 8w21
Magnesium binding site 5 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg504

b:44.6
occ:1.00
 OE2 E:GLU283 2.2 44.8 1.0
O E:HOH627 2.4 33.1 1.0
OD2 E:ASP310 2.4 48.4 1.0
OD2 E:ASP244 2.6 42.7 1.0
CD E:GLU283 3.4 48.7 1.0
CG E:ASP244 3.4 42.6 1.0
CG E:ASP310 3.4 46.9 1.0
OD1 E:ASP244 3.5 38.5 1.0
CB E:ASP310 3.8 47.7 1.0
NZ E:LYS386 3.9 45.6 1.0
OD2 E:ASP284 4.3 44.9 1.0
CG E:GLU283 4.3 41.5 1.0
OE1 E:GLU283 4.3 46.6 1.0
NZ E:LYS335 4.3 40.1 1.0
CD2 E:LEU333 4.5 33.0 1.0
OD1 E:ASP310 4.5 48.9 1.0
OE2 E:GLU166 4.7 59.0 1.0
CB E:ASP244 4.8 45.0 1.0
O E:HOH605 4.9 46.5 1.0
OE1 E:GLN165 5.0 44.6 1.0
CE E:LYS386 5.0 45.3 1.0

Magnesium binding site 6 out of 7 in 8w21

Go back to Magnesium Binding Sites List in 8w21
Magnesium binding site 6 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg504

b:50.4
occ:1.00
 OD2 G:ASP284 2.8 39.4 1.0
OD1 G:ASP244 2.9 42.1 1.0
OD2 G:ASP244 3.0 46.7 1.0
OD2 G:ASP310 3.1 49.8 1.0
OE2 G:GLU283 3.2 43.2 1.0
CG G:ASP244 3.3 42.2 1.0
O G:HOH671 3.5 50.3 1.0
CG G:ASP284 3.7 39.4 1.0
O G:HOH653 3.7 41.3 1.0
CG G:ASP310 3.9 45.6 1.0
CB G:ASP284 4.0 37.7 1.0
CB G:ASP310 4.0 44.5 1.0
CA G:ALA246 4.1 33.3 1.0
CD G:GLU283 4.1 39.5 1.0
CB G:ALA246 4.1 33.3 1.0
OD2 G:ASP311 4.1 54.2 1.0
CG G:GLU283 4.3 38.7 1.0
N G:ALA246 4.4 30.8 1.0
CG G:ASP311 4.5 51.8 1.0
OD1 G:ASP311 4.6 49.8 1.0
OE1 G:GLN165 4.7 46.7 1.0
OD1 G:ASP284 4.8 38.1 1.0
CB G:ASP244 4.8 43.5 1.0
N G:ASP311 4.9 42.9 1.0

Magnesium binding site 7 out of 7 in 8w21

Go back to Magnesium Binding Sites List in 8w21
Magnesium binding site 7 out of 7 in the Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg504

b:67.0
occ:1.00
 O H:HOH663 2.2 55.8 1.0
OD2 H:ASP244 2.7 48.5 1.0
OD2 H:ASP310 2.7 60.8 1.0
OE2 H:GLU283 3.1 51.1 1.0
O H:HOH620 3.1 47.4 1.0
NZ H:LYS386 3.5 39.3 1.0
OE2 H:GLU166 3.6 53.3 1.0
CG H:ASP244 3.8 43.7 1.0
CG H:ASP310 3.9 59.7 1.0
O H:HOH610 3.9 50.9 1.0
CD H:GLU283 4.1 50.0 1.0
OE1 H:GLN165 4.2 45.8 1.0
OD1 H:ASP244 4.3 37.6 1.0
NZ H:LYS335 4.3 47.5 1.0
CE H:LYS386 4.5 45.4 1.0
OE1 H:GLU283 4.6 42.6 1.0
CB H:ASP310 4.7 53.0 1.0
OD1 H:ASP310 4.7 53.0 1.0
O1 H:PO4502 4.7 46.6 1.0
CD H:GLU166 4.8 53.5 1.0
CD2 H:LEU333 4.8 45.9 1.0
CB H:ASP244 4.9 43.3 1.0

Reference:

L.Liu, S.Lovell, K.P.Battaile, A.Cooper, A.P.Cutter. Crystal Structure of Enolase From Chlamydia Trachomatis (P43212 Form) To Be Published.
Page generated: Fri Aug 15 18:09:00 2025

Last articles

Mn in 2UY9
Mn in 2UY8
Mn in 2RLA
Mn in 2SBA
Mn in 2RL9
Mn in 2RL8
Mn in 2RKE
Mn in 2RKA
Mn in 2RKD
Mn in 2RCV
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy