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Magnesium in PDB 8w8f: Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1

Enzymatic activity of Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1

All present enzymatic activity of Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1:
2.1.1.57; 2.7.7.50; 2.7.7.6; 3.6.1.74;

Other elements in 8w8f:

The structure of Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1 also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1 (pdb code 8w8f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1, PDB code: 8w8f:

Magnesium binding site 1 out of 1 in 8w8f

Go back to Magnesium Binding Sites List in 8w8f
Magnesium binding site 1 out of 1 in the Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Co-Transcriptional Rna Capping Enzyme Rngtt-CMTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:26.4
occ:1.00
OD1 A:ASP495 1.9 17.9 1.0
O3' P:U46 1.9 36.9 1.0
OD1 A:ASP497 2.0 17.1 1.0
OD2 A:ASP499 2.3 17.1 1.0
OD1 A:ASP499 2.6 17.1 1.0
CG A:ASP499 2.6 17.1 1.0
CG A:ASP495 3.1 17.9 1.0
C3' P:U46 3.1 36.9 1.0
CG A:ASP497 3.1 17.1 1.0
OD2 A:ASP495 3.6 17.9 1.0
OD2 A:ASP497 3.6 17.1 1.0
C4' P:U46 3.7 36.9 1.0
N A:ASP495 3.9 17.9 1.0
CB A:ASP499 4.0 17.1 1.0
N A:ASP497 4.0 17.1 1.0
C A:ASP495 4.2 17.9 1.0
CB A:ASP495 4.2 17.9 1.0
CA A:ASP495 4.3 17.9 1.0
N A:PHE496 4.3 17.0 1.0
C2' P:U46 4.3 36.9 1.0
CB A:ASP497 4.4 17.1 1.0
N A:ASP499 4.4 17.1 1.0
O A:ASP497 4.5 17.1 1.0
CA A:ASP497 4.5 17.1 1.0
O2' P:U46 4.5 36.9 1.0
C A:ASP497 4.5 17.1 1.0
O A:ASP495 4.6 17.9 1.0
CA A:ASP499 4.6 17.1 1.0
C5' P:U46 4.6 36.9 1.0
O4' P:U46 4.7 36.9 1.0
NH2 A:ARG460 4.7 16.9 1.0
C1' P:U46 4.8 36.9 1.0
C A:PHE496 5.0 17.0 1.0
C A:ALA494 5.0 19.6 1.0

Reference:

Y.Li, Q.Wang, Y.Xu, Z.Li. Strcutures of Co-Transcriptional Rna Capping Enzymes on Paused Transcription Complex To Be Published.
Page generated: Fri Aug 15 18:19:13 2025

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