Magnesium in PDB 8waw: De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss

Enzymatic activity of De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss

All present enzymatic activity of De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss:
2.7.7.6; 3.6.4.12;

Other elements in 8waw:

The structure of De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss also contains other interesting chemical elements:

Zinc

(Zn)

8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss (pdb code 8waw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss, PDB code: 8waw:

Magnesium binding site 1 out of 1 in 8waw

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Magnesium Binding Sites List in 8waw

Magnesium binding site 1 out of 1 in the De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of De Novo Transcribing Complex 13 (TC13), the Early Elongation Complex with Pol II Positioned 13NT Downstream of Tss within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
o:Mg2003 b:126.1 occ:1.00	OD1	o:ASP495	1.8	109.0	1.0
	OD1	o:ASP497	2.0	104.4	1.0
	O3'	Z:G2L13	2.2	20.0	1.0
	OD2	o:ASP497	2.5	104.4	1.0
	CG	o:ASP497	2.5	104.4	1.0
	OD1	o:ASP499	2.6	109.8	1.0
	CA'	Z:G2L13	2.7	20.0	1.0
	CG	o:ASP495	2.9	109.0	1.0
	CG	o:ASP499	3.2	109.8	1.0
	OD2	o:ASP499	3.2	109.8	1.0
	C3'	Z:G2L13	3.3	20.0	1.0
	OD2	o:ASP495	3.5	109.0	1.0
	O	o:ASP495	3.7	102.1	1.0
	C4'	Z:G2L13	3.7	20.0	1.0
	CB	o:ASP497	4.0	104.4	1.0
	CB	o:ASP495	4.0	109.0	1.0
	C5'	Z:G2L13	4.1	20.0	1.0
	C	o:ASP495	4.3	102.1	1.0
	O33	p:W0F1201	4.4	20.0	1.0
	N	o:ASP497	4.5	102.7	1.0
	N	o:ASP495	4.5	102.1	1.0
	CA	o:ASP495	4.5	102.1	1.0
	CB	o:ASP499	4.6	109.8	1.0
	CA	o:ASP497	4.6	102.7	1.0
	C2'	Z:G2L13	4.6	20.0	1.0
	O29	p:W0F1201	4.6	20.0	1.0
	O	o:ASP497	4.7	102.7	1.0
	C	o:ASP497	4.7	102.7	1.0
	O2'	Z:G2L13	4.7	20.0	1.0
	N	o:ASP499	4.9	102.9	1.0

Reference:

X.Chen, W.Liu, Q.Wang, X.Wang, Y.Ren, X.Qu, W.Li, Y.Xu. Structural Visualization of De Novo Transcription Initiation. Science.
ISSN: ESSN 1095-9203

Page generated: Fri Aug 15 18:22:34 2025

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