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Magnesium in PDB 8wwa: Structure of Amppnp-Form Asfvprimpol Hexamer

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Amppnp-Form Asfvprimpol Hexamer (pdb code 8wwa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of Amppnp-Form Asfvprimpol Hexamer, PDB code: 8wwa:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 8wwa

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Magnesium binding site 1 out of 6 in the Structure of Amppnp-Form Asfvprimpol Hexamer


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Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Amppnp-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:116.3
occ:1.00
 O2G A:ANP1001 2.0 120.4 1.0
O2B A:ANP1001 2.1 120.4 1.0
N3B A:ANP1001 2.1 120.4 1.0
OG1 A:THR643 2.5 108.5 1.0
PG A:ANP1001 2.5 120.4 1.0
PB A:ANP1001 2.6 120.4 1.0
CB A:THR643 3.2 108.5 1.0
O1A A:ANP1001 3.3 120.4 1.0
ND2 B:ASN710 3.5 117.8 1.0
O3G A:ANP1001 3.6 120.4 1.0
O1B A:ANP1001 3.6 120.4 1.0
O1G A:ANP1001 3.7 120.4 1.0
O3A A:ANP1001 3.8 120.4 1.0
PA A:ANP1001 4.0 120.4 1.0
OE2 A:GLU692 4.1 132.3 1.0
N A:THR643 4.2 108.5 1.0
CG2 A:THR643 4.2 108.5 1.0
CG B:ASN710 4.3 117.8 1.0
OD1 B:ASN710 4.3 117.8 1.0
CA A:THR643 4.3 108.5 1.0
O2A A:ANP1001 4.5 120.4 1.0
CG A:LYS642 4.6 110.8 1.0
CE A:LYS642 4.9 110.8 1.0

Magnesium binding site 2 out of 6 in 8wwa

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Magnesium binding site 2 out of 6 in the Structure of Amppnp-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Amppnp-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1002

b:134.5
occ:1.00
 N3B B:ANP1001 2.1 141.5 1.0
O3G B:ANP1001 2.2 141.5 1.0
OG1 B:THR643 2.6 124.6 1.0
PG B:ANP1001 2.6 141.5 1.0
PB B:ANP1001 2.6 141.5 1.0
O2B B:ANP1001 2.8 141.5 1.0
O1B B:ANP1001 2.9 141.5 1.0
OE2 B:GLU692 3.2 138.1 1.0
O2G B:ANP1001 3.4 141.5 1.0
CB B:THR643 3.8 124.6 1.0
O1G B:ANP1001 3.8 141.5 1.0
CG B:LYS642 3.9 127.8 1.0
O3A B:ANP1001 4.1 141.5 1.0
N B:THR643 4.4 124.6 1.0
CD B:LYS642 4.4 127.8 1.0
CD B:GLU692 4.4 138.1 1.0
CA B:THR643 4.7 124.6 1.0
CG2 B:THR643 4.8 124.6 1.0
O2A B:ANP1001 4.8 141.5 1.0
PA B:ANP1001 4.9 141.5 1.0

Magnesium binding site 3 out of 6 in 8wwa

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Magnesium binding site 3 out of 6 in the Structure of Amppnp-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Amppnp-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1002

b:196.0
occ:1.00
 O3A D:ANP1001 2.1 196.8 1.0
O2A D:ANP1001 2.2 196.8 1.0
OG1 D:THR643 2.3 181.2 1.0
PA D:ANP1001 2.6 196.8 1.0
N D:THR643 2.7 181.2 1.0
O2B D:ANP1001 2.7 196.8 1.0
PB D:ANP1001 2.8 196.8 1.0
CB D:THR643 3.0 181.2 1.0
CG2 D:THR643 3.0 181.2 1.0
N D:LYS642 3.3 175.4 1.0
CA D:THR643 3.4 181.2 1.0
O1A D:ANP1001 3.5 196.8 1.0
O1B D:ANP1001 3.5 196.8 1.0
C D:GLY641 3.6 179.7 1.0
N D:GLY641 3.7 179.7 1.0
C D:LYS642 3.7 175.4 1.0
N D:PHE644 3.8 171.6 1.0
CA D:GLY641 3.8 179.7 1.0
O5' D:ANP1001 3.9 196.8 1.0
CA D:LYS642 4.0 175.4 1.0
C D:THR643 4.1 181.2 1.0
N3B D:ANP1001 4.3 196.8 1.0
O D:GLY641 4.4 179.7 1.0
CB D:LYS642 4.4 175.4 1.0
NH2 D:ARG647 4.7 171.6 1.0
N D:ASN640 4.7 181.7 1.0
C D:ASN640 4.8 181.7 1.0
CG D:LYS642 4.8 175.4 1.0
O D:LYS642 4.8 175.4 1.0
C5' D:ANP1001 4.9 196.8 1.0

Magnesium binding site 4 out of 6 in 8wwa

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Magnesium binding site 4 out of 6 in the Structure of Amppnp-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Amppnp-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1002

b:159.9
occ:1.00
 N3B E:ANP1001 2.1 146.2 1.0
O1A E:ANP1001 2.2 146.2 1.0
OG1 E:THR643 2.2 137.6 1.0
O2B E:ANP1001 2.3 146.2 1.0
PB E:ANP1001 2.4 146.2 1.0
PA E:ANP1001 2.4 146.2 1.0
O2A E:ANP1001 2.4 146.2 1.0
CB E:THR643 2.5 137.6 1.0
O3A E:ANP1001 2.7 146.2 1.0
N E:THR643 3.3 137.6 1.0
CA E:THR643 3.5 137.6 1.0
CG2 E:THR643 3.7 137.6 1.0
PG E:ANP1001 3.8 146.2 1.0
O1B E:ANP1001 3.8 146.2 1.0
O5' E:ANP1001 4.0 146.2 1.0
ND2 F:ASN710 4.2 123.1 1.0
C E:THR643 4.4 137.6 1.0
N E:PHE644 4.4 127.5 1.0
O1G E:ANP1001 4.5 146.2 1.0
C E:LYS642 4.5 137.2 1.0
N E:LYS642 4.5 137.2 1.0
O2G E:ANP1001 4.6 146.2 1.0
O3G E:ANP1001 4.7 146.2 1.0
C E:GLY641 4.9 137.9 1.0
C5' E:ANP1001 5.0 146.2 1.0
CA E:LYS642 5.0 137.2 1.0

Magnesium binding site 5 out of 6 in 8wwa

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Magnesium binding site 5 out of 6 in the Structure of Amppnp-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Amppnp-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1002

b:124.4
occ:1.00
 N3B F:ANP1001 2.1 116.5 1.0
O2A F:ANP1001 2.1 116.5 1.0
OG1 F:THR643 2.4 109.7 1.0
PA F:ANP1001 2.4 116.5 1.0
O1A F:ANP1001 2.4 116.5 1.0
O2B F:ANP1001 2.4 116.5 1.0
PB F:ANP1001 2.4 116.5 1.0
CB F:THR643 2.5 109.7 1.0
O3A F:ANP1001 2.7 116.5 1.0
N F:THR643 3.0 109.7 1.0
CA F:THR643 3.3 109.7 1.0
PG F:ANP1001 3.7 116.5 1.0
CG2 F:THR643 3.8 109.7 1.0
O1B F:ANP1001 3.9 116.5 1.0
O5' F:ANP1001 3.9 116.5 1.0
N F:PHE644 3.9 103.1 1.0
C F:THR643 4.1 109.7 1.0
N F:LYS642 4.2 108.5 1.0
C F:LYS642 4.2 108.5 1.0
O2G F:ANP1001 4.4 116.5 1.0
O3G F:ANP1001 4.5 116.5 1.0
C F:GLY641 4.5 111.5 1.0
O1G F:ANP1001 4.5 116.5 1.0
CA F:LYS642 4.7 108.5 1.0
N F:GLY641 4.7 111.5 1.0
CA F:GLY641 4.8 111.5 1.0
C5' F:ANP1001 4.9 116.5 1.0
CB F:LYS642 4.9 108.5 1.0

Magnesium binding site 6 out of 6 in 8wwa

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Magnesium binding site 6 out of 6 in the Structure of Amppnp-Form Asfvprimpol Hexamer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Amppnp-Form Asfvprimpol Hexamer within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1001

b:186.3
occ:1.00
 O1A C:ANP1002 2.1 177.8 1.0
N3B C:ANP1002 2.1 177.8 1.0
O2A C:ANP1002 2.4 177.8 1.0
PG C:ANP1002 2.5 177.8 1.0
PA C:ANP1002 2.6 177.8 1.0
O2G C:ANP1002 2.6 177.8 1.0
O1G C:ANP1002 2.7 177.8 1.0
OG1 C:THR643 3.3 158.6 1.0
PB C:ANP1002 3.3 177.8 1.0
O3A C:ANP1002 3.4 177.8 1.0
O5' C:ANP1002 4.0 177.8 1.0
O3G C:ANP1002 4.1 177.8 1.0
O1B C:ANP1002 4.2 177.8 1.0
CB C:THR643 4.5 158.6 1.0
O2B C:ANP1002 4.5 177.8 1.0
CG2 C:THR643 4.7 158.6 1.0
CA C:CYS639 4.8 176.7 1.0
N C:CYS639 4.9 176.7 1.0
NH2 D:ARG751 4.9 180.3 1.0
C5' C:ANP1002 5.0 177.8 1.0

Reference:

T.H.Shi, Y.Y.Guo, R.H.Yan. Structure of Adp-Form Asfvprimpol Hexamer To Be Published.
Page generated: Fri Aug 15 20:05:15 2025

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