Magnesium in PDB 8x3z: Thdp-Dependent Hka Synthase

The structure of Thdp-Dependent Hka Synthase, PDB code: 8x3z was solved by J.H.Yu, T.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.98 / 2.75
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	58.916, 129.734, 220.675, 90, 90, 90
R / Rfree (%)	17.2 / 21.9

The binding sites of Magnesium atom in the Thdp-Dependent Hka Synthase (pdb code 8x3z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Thdp-Dependent Hka Synthase, PDB code: 8x3z:

Magnesium binding site 1 out of 1 in the Thdp-Dependent Hka Synthase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Thdp-Dependent Hka Synthase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg603 b:30.0 occ:1.00 OD1 B:ASN457 2.2 53.1 1.0 OD2 B:ASP430 2.2 41.0 1.0 OD1 B:ASP430 2.2 51.0 1.0 O B:ARG459 2.3 47.1 1.0 O1A B:TPP601 2.3 49.2 1.0 O3B B:TPP601 2.4 89.4 1.0 CG B:ASP430 2.5 38.0 1.0 O1B B:TPP601 2.5 105.2 1.0 PB B:TPP601 2.8 102.0 1.0 CG B:ASN457 3.3 35.5 1.0 C B:ARG459 3.5 39.5 1.0 PA B:TPP601 3.6 69.9 1.0 O3A B:TPP601 3.7 95.1 1.0 N B:ASN457 3.7 41.4 1.0 N B:ARG459 3.8 31.9 1.0 CB B:ASP430 3.9 29.1 1.0 O B:MET455 3.9 45.6 1.0 N B:ASP430 4.0 25.5 1.0 ND2 B:ASN457 4.1 31.5 1.0 N B:ALA458 4.2 40.8 1.0 O2B B:TPP601 4.2 21.9 1.0 CA B:ARG459 4.3 33.4 1.0 CA B:ASN457 4.3 36.5 1.0 N B:GLY431 4.3 33.3 1.0 CB B:ASN457 4.4 28.1 1.0 CA B:ASP430 4.4 26.8 1.0 C B:ASN457 4.4 40.6 1.0 N B:LEU460 4.5 46.9 1.0 O2A B:TPP601 4.5 66.4 1.0 O7 B:TPP601 4.7 87.2 1.0 CA B:LEU460 4.7 47.9 1.0 C B:ASN456 4.7 39.1 1.0 CA B:ASN456 4.7 31.9 1.0 CG B:ARG459 4.8 35.1 1.0 N B:GLY461 4.8 82.3 1.0 C B:ALA458 4.8 39.1 1.0 C B:ASP430 4.8 31.5 1.0 CA B:ALA458 4.9 39.1 1.0 C B:GLY429 4.9 29.6 1.0 C B:MET455 5.0 36.6 1.0

J.H.Yu, T.Liu. Thdp-Dependent Hka Synthase To Be Published.