Magnesium in PDB 8x5i: Tetramer Gabija with Atp (Local Refinement)

The binding sites of Magnesium atom in the Tetramer Gabija with Atp (Local Refinement) (pdb code 8x5i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Tetramer Gabija with Atp (Local Refinement), PDB code: 8x5i:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Tetramer Gabija with Atp (Local Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tetramer Gabija with Atp (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:43.2 occ:1.00 O1G A:ATP601 2.1 58.9 1.0 OG1 A:THR36 2.2 64.9 1.0 O2B A:ATP601 2.2 66.6 1.0 PG A:ATP601 3.2 65.1 1.0 O3B A:ATP601 3.3 66.1 1.0 PB A:ATP601 3.4 62.9 1.0 CB A:THR36 3.4 49.0 1.0 O1A A:ATP601 3.8 69.6 1.0 OE2 A:GLU288 3.8 68.5 1.0 N A:THR36 4.1 53.1 1.0 O2G A:ATP601 4.2 68.3 1.0 O3A A:ATP601 4.3 54.3 1.0 O3G A:ATP601 4.3 69.7 1.0 CG2 A:THR36 4.3 50.4 1.0 CA A:THR36 4.3 47.7 1.0 O1B A:ATP601 4.5 69.5 1.0 PA A:ATP601 4.6 58.2 1.0 OE2 A:GLU289 4.6 75.3 1.0 CD A:GLU288 4.8 75.4 1.0 NZ A:LYS35 4.8 52.6 1.0 CE A:LYS35 4.9 42.0 1.0 OD2 D:ASP259 4.9 83.1 1.0

Magnesium binding site 2 out of 4 in the Tetramer Gabija with Atp (Local Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tetramer Gabija with Atp (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:61.8 occ:1.00 OG1 B:THR36 2.1 63.4 1.0 O2G B:ATP601 2.5 85.0 1.0 O2B B:ATP601 2.8 84.2 1.0 CB B:THR36 3.5 61.4 1.0 OE2 B:GLU288 3.6 84.3 1.0 O1A B:ATP601 3.7 84.3 1.0 PG B:ATP601 3.8 103.5 1.0 O3B B:ATP601 3.9 86.8 1.0 PB B:ATP601 3.9 83.8 1.0 CG2 B:THR36 4.1 68.5 1.0 CA B:THR36 4.5 55.2 1.0 N B:THR36 4.5 60.1 1.0 O3A B:ATP601 4.6 85.4 1.0 PA B:ATP601 4.7 93.3 1.0 O3G B:ATP601 4.7 87.4 1.0 O1G B:ATP601 4.8 91.3 1.0 CD B:GLU288 4.8 80.7 1.0

Magnesium binding site 3 out of 4 in the Tetramer Gabija with Atp (Local Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tetramer Gabija with Atp (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:65.7 occ:1.00 O2B C:ATP601 2.4 86.8 1.0 O3G C:ATP601 2.5 89.2 1.0 O3B C:ATP601 3.5 98.8 1.0 PB C:ATP601 3.5 90.0 1.0 PG C:ATP601 3.5 101.3 1.0 CB C:THR36 3.9 66.5 1.0 CG2 C:THR36 3.9 62.5 1.0 OE2 C:GLU288 4.1 77.0 1.0 O1G C:ATP601 4.2 85.7 1.0 OD2 B:ASP259 4.2 124.5 1.0 OE2 C:GLU289 4.3 70.9 1.0 O1A C:ATP601 4.5 92.1 1.0 O1B C:ATP601 4.5 77.3 1.0 O3A C:ATP601 4.6 90.8 1.0 OG1 C:THR36 4.7 73.1 1.0 NZ C:LYS35 4.7 51.4 1.0 O2G C:ATP601 4.8 95.7 1.0 N C:THR36 4.9 67.0 1.0 CA C:THR36 5.0 67.3 1.0

Magnesium binding site 4 out of 4 in the Tetramer Gabija with Atp (Local Refinement)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tetramer Gabija with Atp (Local Refinement) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:61.1 occ:1.00 OG1 D:THR36 2.1 54.9 1.0 O2B D:ATP601 2.3 82.1 1.0 O1G D:ATP601 2.4 83.6 1.0 PG D:ATP601 3.2 90.0 1.0 O3B D:ATP601 3.2 71.4 1.0 PB D:ATP601 3.4 73.1 1.0 CB D:THR36 3.5 56.4 1.0 O2G D:ATP601 3.7 85.7 1.0 O1A D:ATP601 4.1 79.0 1.0 O3A D:ATP601 4.1 81.9 1.0 CG2 D:THR36 4.2 61.1 1.0 CB A:ASP259 4.3 114.8 1.0 N D:THR36 4.3 57.1 1.0 OE2 D:GLU289 4.5 68.2 1.0 CA D:THR36 4.5 56.4 1.0 PA D:ATP601 4.5 82.4 1.0 O1B D:ATP601 4.6 76.2 1.0 O3G D:ATP601 4.7 84.1 1.0 O2A D:ATP601 4.7 76.2 1.0

J.Li, Z.Wang, L.Wang. Nucleotide-Sensing Endonuclease with Dsdna To Be Published.