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Magnesium in PDB 8xbq: Crystal Structure of Activity Improved Formolase Variant K2

Protein crystallography data

The structure of Crystal Structure of Activity Improved Formolase Variant K2, PDB code: 8xbq was solved by H.L.Wei, Y.Y.Cheng, Z.J.Tang, Z.J.Tan, W.D.Liu, L.L.Zhu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.60 / 2.05
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 98.271, 99.376, 110.092, 90, 90, 90
R / Rfree (%) 17.8 / 24.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Activity Improved Formolase Variant K2 (pdb code 8xbq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Activity Improved Formolase Variant K2, PDB code: 8xbq:

Magnesium binding site 1 out of 1 in 8xbq

Go back to Magnesium Binding Sites List in 8xbq
Magnesium binding site 1 out of 1 in the Crystal Structure of Activity Improved Formolase Variant K2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Activity Improved Formolase Variant K2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:27.8
occ:1.00
O A:THR457 2.1 27.1 1.0
OD1 A:ASN455 2.1 26.6 1.0
OD1 A:ASP428 2.1 27.8 1.0
O1A A:TPP601 2.1 30.1 1.0
O3B A:TPP601 2.1 26.0 1.0
O A:HOH733 2.2 22.8 1.0
CG A:ASN455 3.0 25.3 1.0
PA A:TPP601 3.2 25.1 1.0
PB A:TPP601 3.3 27.0 1.0
O3A A:TPP601 3.3 26.0 1.0
CG A:ASP428 3.3 27.3 1.0
C A:THR457 3.3 27.8 1.0
ND2 A:ASN455 3.4 21.6 1.0
N A:ASP428 3.9 26.1 1.0
O7 A:TPP601 4.0 23.2 1.0
OD2 A:ASP428 4.0 27.6 1.0
N A:THR457 4.0 28.2 1.0
N A:GLY459 4.1 24.3 1.0
N A:GLY429 4.1 22.3 1.0
O A:MET453 4.2 25.1 1.0
O2B A:TPP601 4.2 30.6 1.0
CA A:THR457 4.2 28.4 1.0
N A:TYR458 4.3 26.0 1.0
O A:HOH744 4.4 19.3 1.0
O2A A:TPP601 4.4 26.3 1.0
CB A:ASN455 4.4 26.8 1.0
O1B A:TPP601 4.4 26.9 1.0
CB A:ASP428 4.4 28.0 1.0
N A:ASN455 4.5 26.1 1.0
CA A:GLY427 4.6 21.8 1.0
CA A:ASP428 4.6 26.7 1.0
CA A:TYR458 4.6 25.2 1.0
C A:GLY427 4.6 24.5 1.0
CG2 A:THR457 4.7 29.9 1.0
CA A:ASN455 4.8 26.6 1.0
N A:GLY456 4.9 26.9 1.0
C A:ASP428 4.9 25.6 1.0
C A:TYR458 4.9 26.1 1.0
CA A:GLY459 4.9 24.5 1.0
C A:ASN455 5.0 26.4 1.0

Reference:

H.L.Wei, Y.Y.Cheng, Z.J.Tang, Z.J.Tan, W.D.Liu, L.L.Zhu. Crystal Structure of Activity Improved Formolase Variant K2 To Be Published.
Page generated: Fri Aug 15 20:23:00 2025

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