Magnesium in PDB 8xch: Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation.

All present enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation.:
2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13;

The structure of Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation. also contains other interesting chemical elements:

Zinc

(Zn)

32 atoms

The binding sites of Magnesium atom in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation. (pdb code 8xch). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation., PDB code: 8xch:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1003 b:130.6 occ:1.00 O I:ASN209 2.0 105.0 1.0 CZ I:TYR217 2.1 106.1 1.0 OH I:TYR217 2.3 103.5 1.0 CE1 I:TYR217 2.3 105.7 1.0 CA I:ASN209 2.4 97.3 1.0 C I:ASN209 2.4 97.6 1.0 CE2 I:TYR217 2.9 101.5 1.0 O I:ASP208 2.9 103.3 1.0 CD1 I:TYR217 3.2 102.5 1.0 CB I:ASN209 3.4 93.7 1.0 N I:ASN209 3.4 97.5 1.0 C I:ASP208 3.6 99.3 1.0 N I:GLN210 3.6 86.0 1.0 CD2 I:TYR217 3.6 96.1 1.0 CG I:TYR217 3.7 95.5 1.0 ND2 I:ASN209 3.8 98.0 1.0 CG I:ASN209 4.1 99.5 1.0 CG2 I:THR123 4.4 98.9 1.0 CA I:GLN210 4.5 82.3 1.0 C I:GLN210 4.6 88.1 1.0 O I:GLN210 4.8 102.0 1.0 N I:ASP211 5.0 91.7 1.0

Magnesium binding site 2 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Sars-Cov-2 Replication-Transcription Complex Has A Dimer-of-Dimeric Architecture (Ddrtc) in Pre-Capping Initiation. within 5.0Å range: probe atom residue distance (Å) B Occ Y:Mg1003 b:139.3 occ:1.00 O Y:ASN209 2.0 109.0 1.0 CE1 Y:TYR217 2.1 110.8 1.0 CA Y:ASN209 2.2 101.9 1.0 C Y:ASN209 2.4 100.7 1.0 CD1 Y:TYR217 2.5 109.1 1.0 CZ Y:TYR217 2.6 111.9 1.0 CB Y:ASN209 2.7 103.3 1.0 ND2 Y:ASN209 3.2 104.2 1.0 OH Y:TYR217 3.3 108.8 1.0 CG Y:TYR217 3.3 103.0 1.0 CE2 Y:TYR217 3.4 107.4 1.0 CG Y:ASN209 3.5 106.2 1.0 N Y:ASN209 3.5 104.9 1.0 O Y:ASP208 3.6 110.6 1.0 CD2 Y:TYR217 3.7 99.7 1.0 N Y:GLN210 3.7 78.0 1.0 C Y:ASP208 4.0 108.8 1.0 O Y:TYR217 4.1 108.7 1.0 N Y:TYR217 4.2 103.2 1.0 C Y:TYR217 4.3 110.3 1.0 CB Y:ASP218 4.4 132.6 1.0 CB Y:TYR217 4.4 108.9 1.0 CA Y:TYR217 4.5 109.0 1.0 CA Y:GLN210 4.6 79.7 1.0 OD1 Y:ASN209 4.7 108.0 1.0 N Y:ASP218 4.9 129.6 1.0

L.Yan, Z.Lou. Structural Basis For Template-Product Rna Duplex Unwinding By Sars-Cov-2 Helicase To Be Published.