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Magnesium in PDB 8xdl: F-Actin-End

Magnesium Binding Sites:

The binding sites of Magnesium atom in the F-Actin-End (pdb code 8xdl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the F-Actin-End, PDB code: 8xdl:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8xdl

Go back to Magnesium Binding Sites List in 8xdl
Magnesium binding site 1 out of 3 in the F-Actin-End


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F-Actin-End within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:15.4
occ:1.00
O2B A:ADP401 2.3 16.2 1.0
O2A A:ADP401 2.9 16.2 1.0
PB A:ADP401 3.5 16.2 1.0
PA A:ADP401 3.8 16.2 1.0
O3A A:ADP401 3.8 16.2 1.0
O3B A:ADP401 3.9 16.2 1.0
OD2 A:ASP11 4.2 20.4 1.0
OD1 A:ASP154 4.3 15.1 1.0
O1A A:ADP401 4.3 16.2 1.0
CA A:GLY156 4.5 14.8 1.0
CA A:GLY301 4.5 14.3 1.0
O1B A:ADP401 4.8 16.2 1.0
NZ A:LYS18 4.9 19.1 1.0
OD2 A:ASP154 4.9 15.1 1.0

Magnesium binding site 2 out of 3 in 8xdl

Go back to Magnesium Binding Sites List in 8xdl
Magnesium binding site 2 out of 3 in the F-Actin-End


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F-Actin-End within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:11.7
occ:1.00
O2B B:ADP401 2.3 13.8 1.0
O2A B:ADP401 2.9 13.8 1.0
PB B:ADP401 3.5 13.8 1.0
PA B:ADP401 3.8 13.8 1.0
O3A B:ADP401 3.8 13.8 1.0
O3B B:ADP401 3.9 13.8 1.0
OD2 B:ASP11 4.2 15.5 1.0
OD1 B:ASP154 4.3 14.1 1.0
O1A B:ADP401 4.3 13.8 1.0
CA B:GLY156 4.5 14.3 1.0
CA B:GLY301 4.5 12.7 1.0
O1B B:ADP401 4.8 13.8 1.0
NZ B:LYS18 4.9 13.2 1.0
OD2 B:ASP154 4.9 14.1 1.0

Magnesium binding site 3 out of 3 in 8xdl

Go back to Magnesium Binding Sites List in 8xdl
Magnesium binding site 3 out of 3 in the F-Actin-End


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F-Actin-End within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:15.8
occ:1.00
O2B C:ADP401 2.3 15.4 1.0
O2A C:ADP401 2.9 15.4 1.0
PB C:ADP401 3.5 15.4 1.0
PA C:ADP401 3.8 15.4 1.0
O3A C:ADP401 3.8 15.4 1.0
O3B C:ADP401 3.9 15.4 1.0
OD2 C:ASP11 4.2 19.3 1.0
OD1 C:ASP154 4.3 17.9 1.0
O1A C:ADP401 4.3 15.4 1.0
CA C:GLY156 4.5 15.5 1.0
CA C:GLY301 4.5 15.4 1.0
O1B C:ADP401 4.8 15.4 1.0
NZ C:LYS18 4.9 17.4 1.0
OD2 C:ASP154 4.9 17.9 1.0

Reference:

M.Huang, P.Yan, G.Wang, J.Li, L.Wang, T.Liu. Aglycone Polyethers Target Actin Filaments As Muscle-Invasive Bladder Cancer Inhibitors To Be Published.
Page generated: Fri Aug 15 20:23:48 2025

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