Magnesium in PDB 8ygl: Rhodobacter Blasticus Rc-LH1 Monomer
Other elements in 8ygl:
The structure of Rhodobacter Blasticus Rc-LH1 Monomer also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 1 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
0:Mg101
b:11.8
occ:1.00
|
MG
|
0:BCL101
|
0.0
|
11.8
|
1.0
|
NA
|
0:BCL101
|
2.0
|
11.8
|
1.0
|
ND
|
0:BCL101
|
2.0
|
11.8
|
1.0
|
NB
|
0:BCL101
|
2.0
|
11.8
|
1.0
|
NC
|
0:BCL101
|
2.1
|
11.8
|
1.0
|
C4D
|
0:BCL101
|
2.9
|
11.8
|
1.0
|
C4A
|
0:BCL101
|
3.0
|
11.8
|
1.0
|
NE2
|
0:HIS39
|
3.0
|
7.9
|
1.0
|
C1B
|
0:BCL101
|
3.0
|
11.8
|
1.0
|
C1C
|
0:BCL101
|
3.0
|
11.8
|
1.0
|
C1A
|
0:BCL101
|
3.0
|
11.8
|
1.0
|
C4B
|
0:BCL101
|
3.1
|
11.8
|
1.0
|
C4C
|
0:BCL101
|
3.1
|
11.8
|
1.0
|
C1D
|
0:BCL101
|
3.1
|
11.8
|
1.0
|
CHB
|
0:BCL101
|
3.2
|
11.8
|
1.0
|
CHA
|
0:BCL101
|
3.3
|
11.8
|
1.0
|
CHC
|
0:BCL101
|
3.4
|
11.8
|
1.0
|
CHD
|
0:BCL101
|
3.6
|
11.8
|
1.0
|
CE1
|
0:HIS39
|
3.6
|
7.9
|
1.0
|
CMB
|
A:BCL101
|
3.6
|
10.1
|
1.0
|
CBB
|
A:BCL101
|
3.8
|
10.1
|
1.0
|
C3D
|
0:BCL101
|
4.1
|
11.8
|
1.0
|
CD2
|
0:HIS39
|
4.2
|
7.9
|
1.0
|
C2B
|
0:BCL101
|
4.2
|
11.8
|
1.0
|
C2D
|
0:BCL101
|
4.3
|
11.8
|
1.0
|
C3B
|
0:BCL101
|
4.3
|
11.8
|
1.0
|
C2B
|
A:BCL101
|
4.3
|
10.1
|
1.0
|
CD1
|
9:ILE31
|
4.3
|
9.2
|
1.0
|
CAB
|
A:BCL101
|
4.4
|
10.1
|
1.0
|
C3A
|
0:BCL101
|
4.4
|
11.8
|
1.0
|
C2C
|
0:BCL101
|
4.4
|
11.8
|
1.0
|
C2A
|
0:BCL101
|
4.4
|
11.8
|
1.0
|
C3C
|
0:BCL101
|
4.5
|
11.8
|
1.0
|
C3B
|
A:BCL101
|
4.6
|
10.1
|
1.0
|
CG2
|
9:ILE31
|
4.7
|
9.2
|
1.0
|
CBD
|
0:BCL101
|
4.8
|
11.8
|
1.0
|
ND1
|
0:HIS39
|
4.8
|
7.9
|
1.0
|
|
Magnesium binding site 2 out
of 34 in 8ygl
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Magnesium Binding Sites List in 8ygl
Magnesium binding site 2 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Mg101
b:71.5
occ:1.00
|
MG
|
1:BCL101
|
0.0
|
71.5
|
1.0
|
NA
|
1:BCL101
|
2.0
|
71.5
|
1.0
|
ND
|
1:BCL101
|
2.0
|
71.5
|
1.0
|
NB
|
1:BCL101
|
2.0
|
71.5
|
1.0
|
NC
|
1:BCL101
|
2.1
|
71.5
|
1.0
|
C4D
|
1:BCL101
|
2.9
|
71.5
|
1.0
|
C4A
|
1:BCL101
|
3.0
|
71.5
|
1.0
|
NE2
|
1:HIS32
|
3.0
|
68.3
|
1.0
|
C1C
|
1:BCL101
|
3.0
|
71.5
|
1.0
|
C1A
|
1:BCL101
|
3.0
|
71.5
|
1.0
|
C1B
|
1:BCL101
|
3.0
|
71.5
|
1.0
|
C4B
|
1:BCL101
|
3.1
|
71.5
|
1.0
|
C19
|
2:SPO102
|
3.1
|
69.9
|
1.0
|
C1D
|
1:BCL101
|
3.2
|
71.5
|
1.0
|
C4C
|
1:BCL101
|
3.2
|
71.5
|
1.0
|
C20
|
2:SPO102
|
3.3
|
69.9
|
1.0
|
CHB
|
1:BCL101
|
3.3
|
71.5
|
1.0
|
CHC
|
1:BCL101
|
3.3
|
71.5
|
1.0
|
CHA
|
1:BCL101
|
3.3
|
71.5
|
1.0
|
CE1
|
1:HIS32
|
3.4
|
68.3
|
1.0
|
CHD
|
1:BCL101
|
3.6
|
71.5
|
1.0
|
CBB
|
Z:BCL101
|
3.9
|
69.0
|
1.0
|
C3D
|
1:BCL101
|
4.1
|
71.5
|
1.0
|
C17
|
2:SPO102
|
4.2
|
69.9
|
1.0
|
C21
|
2:SPO102
|
4.2
|
69.9
|
1.0
|
C2B
|
1:BCL101
|
4.2
|
71.5
|
1.0
|
C3B
|
1:BCL101
|
4.3
|
71.5
|
1.0
|
C2D
|
1:BCL101
|
4.3
|
71.5
|
1.0
|
CMB
|
Z:BCL101
|
4.3
|
69.0
|
1.0
|
CD2
|
1:HIS32
|
4.3
|
68.3
|
1.0
|
C3A
|
1:BCL101
|
4.4
|
71.5
|
1.0
|
C2A
|
1:BCL101
|
4.4
|
71.5
|
1.0
|
C2C
|
1:BCL101
|
4.4
|
71.5
|
1.0
|
C3C
|
1:BCL101
|
4.5
|
71.5
|
1.0
|
C16
|
2:SPO102
|
4.6
|
69.9
|
1.0
|
ND1
|
1:HIS32
|
4.7
|
68.3
|
1.0
|
CBD
|
1:BCL101
|
4.8
|
71.5
|
1.0
|
C22
|
2:SPO102
|
4.9
|
69.9
|
1.0
|
C2B
|
Z:BCL101
|
5.0
|
69.0
|
1.0
|
|
Magnesium binding site 3 out
of 34 in 8ygl
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Magnesium Binding Sites List in 8ygl
Magnesium binding site 3 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Mg101
b:77.4
occ:1.00
|
MG
|
2:BCL101
|
0.0
|
77.4
|
1.0
|
ND
|
2:BCL101
|
2.0
|
77.4
|
1.0
|
NA
|
2:BCL101
|
2.0
|
77.4
|
1.0
|
NB
|
2:BCL101
|
2.0
|
77.4
|
1.0
|
NC
|
2:BCL101
|
2.1
|
77.4
|
1.0
|
C4D
|
2:BCL101
|
2.9
|
77.4
|
1.0
|
C4A
|
2:BCL101
|
3.0
|
77.4
|
1.0
|
NE2
|
2:HIS39
|
3.0
|
70.1
|
1.0
|
C1C
|
2:BCL101
|
3.0
|
77.4
|
1.0
|
C1B
|
2:BCL101
|
3.0
|
77.4
|
1.0
|
C1A
|
2:BCL101
|
3.0
|
77.4
|
1.0
|
C4B
|
2:BCL101
|
3.1
|
77.4
|
1.0
|
C4C
|
2:BCL101
|
3.1
|
77.4
|
1.0
|
C1D
|
2:BCL101
|
3.1
|
77.4
|
1.0
|
CHB
|
2:BCL101
|
3.3
|
77.4
|
1.0
|
CHA
|
2:BCL101
|
3.3
|
77.4
|
1.0
|
CHC
|
2:BCL101
|
3.4
|
77.4
|
1.0
|
CHD
|
2:BCL101
|
3.6
|
77.4
|
1.0
|
CE1
|
2:HIS39
|
3.8
|
70.1
|
1.0
|
CMB
|
a:BCL101
|
3.8
|
81.9
|
1.0
|
CBB
|
a:BCL101
|
3.9
|
81.9
|
1.0
|
CD2
|
2:HIS39
|
4.1
|
70.1
|
1.0
|
C3D
|
2:BCL101
|
4.1
|
77.4
|
1.0
|
C2B
|
2:BCL101
|
4.2
|
77.4
|
1.0
|
CAB
|
a:BCL101
|
4.2
|
81.9
|
1.0
|
C2D
|
2:BCL101
|
4.3
|
77.4
|
1.0
|
C3B
|
2:BCL101
|
4.3
|
77.4
|
1.0
|
C2C
|
2:BCL101
|
4.3
|
77.4
|
1.0
|
C3A
|
2:BCL101
|
4.4
|
77.4
|
1.0
|
C2A
|
2:BCL101
|
4.4
|
77.4
|
1.0
|
C3C
|
2:BCL101
|
4.5
|
77.4
|
1.0
|
OBB
|
a:BCL101
|
4.5
|
81.9
|
1.0
|
C2B
|
a:BCL101
|
4.6
|
81.9
|
1.0
|
CD1
|
1:ILE31
|
4.8
|
72.8
|
1.0
|
CBD
|
2:BCL101
|
4.8
|
77.4
|
1.0
|
C3B
|
a:BCL101
|
4.8
|
81.9
|
1.0
|
CMC
|
2:BCL101
|
5.0
|
77.4
|
1.0
|
|
Magnesium binding site 4 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 4 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Mg101
b:60.8
occ:1.00
|
MG
|
3:BCL101
|
0.0
|
60.8
|
1.0
|
ND
|
3:BCL101
|
2.0
|
60.8
|
1.0
|
NA
|
3:BCL101
|
2.0
|
60.8
|
1.0
|
NB
|
3:BCL101
|
2.0
|
60.8
|
1.0
|
NC
|
3:BCL101
|
2.1
|
60.8
|
1.0
|
C4D
|
3:BCL101
|
2.9
|
60.8
|
1.0
|
C4A
|
3:BCL101
|
3.0
|
60.8
|
1.0
|
C1B
|
3:BCL101
|
3.0
|
60.8
|
1.0
|
C1C
|
3:BCL101
|
3.0
|
60.8
|
1.0
|
C1A
|
3:BCL101
|
3.1
|
60.8
|
1.0
|
C4B
|
3:BCL101
|
3.1
|
60.8
|
1.0
|
C4C
|
3:BCL101
|
3.2
|
60.8
|
1.0
|
C1D
|
3:BCL101
|
3.2
|
60.8
|
1.0
|
CHB
|
3:BCL101
|
3.3
|
60.8
|
1.0
|
CHA
|
3:BCL101
|
3.3
|
60.8
|
1.0
|
CHC
|
3:BCL101
|
3.3
|
60.8
|
1.0
|
NE2
|
3:HIS32
|
3.4
|
54.3
|
1.0
|
CHD
|
3:BCL101
|
3.6
|
60.8
|
1.0
|
C18
|
Z:SPO102
|
3.7
|
64.8
|
1.0
|
CMB
|
C:BCL101
|
4.0
|
46.6
|
1.0
|
CE1
|
3:HIS32
|
4.2
|
54.3
|
1.0
|
C3D
|
3:BCL101
|
4.2
|
60.8
|
1.0
|
C2B
|
3:BCL101
|
4.2
|
60.8
|
1.0
|
C3B
|
3:BCL101
|
4.3
|
60.8
|
1.0
|
C2D
|
3:BCL101
|
4.3
|
60.8
|
1.0
|
C3A
|
3:BCL101
|
4.4
|
60.8
|
1.0
|
C2C
|
3:BCL101
|
4.4
|
60.8
|
1.0
|
C2A
|
3:BCL101
|
4.4
|
60.8
|
1.0
|
CD2
|
3:HIS32
|
4.4
|
54.3
|
1.0
|
C3C
|
3:BCL101
|
4.5
|
60.8
|
1.0
|
C19
|
Z:SPO102
|
4.6
|
64.8
|
1.0
|
C17
|
Z:SPO102
|
4.6
|
64.8
|
1.0
|
C2B
|
C:BCL101
|
4.7
|
46.6
|
1.0
|
CBD
|
3:BCL101
|
4.9
|
60.8
|
1.0
|
CBB
|
C:BCL101
|
4.9
|
46.6
|
1.0
|
CAB
|
C:BCL101
|
4.9
|
46.6
|
1.0
|
|
Magnesium binding site 5 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 5 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
7:Mg101
b:25.6
occ:1.00
|
MG
|
7:BCL101
|
0.0
|
25.6
|
1.0
|
NA
|
7:BCL101
|
2.0
|
25.6
|
1.0
|
ND
|
7:BCL101
|
2.0
|
25.6
|
1.0
|
NB
|
7:BCL101
|
2.0
|
25.6
|
1.0
|
NC
|
7:BCL101
|
2.1
|
25.6
|
1.0
|
C4D
|
7:BCL101
|
2.9
|
25.6
|
1.0
|
C4A
|
7:BCL101
|
3.0
|
25.6
|
1.0
|
C1C
|
7:BCL101
|
3.0
|
25.6
|
1.0
|
C1A
|
7:BCL101
|
3.0
|
25.6
|
1.0
|
C1B
|
7:BCL101
|
3.0
|
25.6
|
1.0
|
NE2
|
7:HIS32
|
3.1
|
17.2
|
1.0
|
C4B
|
7:BCL101
|
3.1
|
25.6
|
1.0
|
C4C
|
7:BCL101
|
3.1
|
25.6
|
1.0
|
C1D
|
7:BCL101
|
3.1
|
25.6
|
1.0
|
CHB
|
7:BCL101
|
3.3
|
25.6
|
1.0
|
CHA
|
7:BCL101
|
3.3
|
25.6
|
1.0
|
CHC
|
7:BCL101
|
3.4
|
25.6
|
1.0
|
CHD
|
7:BCL101
|
3.6
|
25.6
|
1.0
|
CE1
|
7:HIS32
|
3.7
|
17.2
|
1.0
|
C3D
|
7:BCL101
|
4.1
|
25.6
|
1.0
|
CD2
|
7:HIS32
|
4.2
|
17.2
|
1.0
|
C2B
|
7:BCL101
|
4.2
|
25.6
|
1.0
|
C2D
|
7:BCL101
|
4.3
|
25.6
|
1.0
|
C3B
|
7:BCL101
|
4.3
|
25.6
|
1.0
|
C3A
|
7:BCL101
|
4.3
|
25.6
|
1.0
|
C2A
|
7:BCL101
|
4.4
|
25.6
|
1.0
|
C2C
|
7:BCL101
|
4.4
|
25.6
|
1.0
|
C3C
|
7:BCL101
|
4.4
|
25.6
|
1.0
|
CMA
|
7:BCL101
|
4.7
|
25.6
|
1.0
|
CBD
|
7:BCL101
|
4.8
|
25.6
|
1.0
|
ND1
|
7:HIS32
|
5.0
|
17.2
|
1.0
|
|
Magnesium binding site 6 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 6 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
8:Mg101
b:18.5
occ:1.00
|
MG
|
8:BCL101
|
0.0
|
18.5
|
1.0
|
NA
|
8:BCL101
|
2.0
|
18.5
|
1.0
|
ND
|
8:BCL101
|
2.0
|
18.5
|
1.0
|
NB
|
8:BCL101
|
2.0
|
18.5
|
1.0
|
NC
|
8:BCL101
|
2.1
|
18.5
|
1.0
|
C4D
|
8:BCL101
|
2.9
|
18.5
|
1.0
|
C4A
|
8:BCL101
|
3.0
|
18.5
|
1.0
|
C1A
|
8:BCL101
|
3.0
|
18.5
|
1.0
|
C1C
|
8:BCL101
|
3.0
|
18.5
|
1.0
|
C1B
|
8:BCL101
|
3.0
|
18.5
|
1.0
|
NE2
|
8:HIS39
|
3.0
|
17.7
|
1.0
|
C4B
|
8:BCL101
|
3.1
|
18.5
|
1.0
|
C4C
|
8:BCL101
|
3.1
|
18.5
|
1.0
|
C1D
|
8:BCL101
|
3.1
|
18.5
|
1.0
|
CBB
|
9:BCL101
|
3.3
|
13.6
|
1.0
|
CHB
|
8:BCL101
|
3.3
|
18.5
|
1.0
|
CHA
|
8:BCL101
|
3.3
|
18.5
|
1.0
|
CHC
|
8:BCL101
|
3.4
|
18.5
|
1.0
|
CMB
|
9:BCL101
|
3.5
|
13.6
|
1.0
|
CE1
|
8:HIS39
|
3.6
|
17.7
|
1.0
|
CHD
|
8:BCL101
|
3.6
|
18.5
|
1.0
|
C3D
|
8:BCL101
|
4.1
|
18.5
|
1.0
|
C2B
|
8:BCL101
|
4.2
|
18.5
|
1.0
|
C2D
|
8:BCL101
|
4.2
|
18.5
|
1.0
|
C3B
|
8:BCL101
|
4.3
|
18.5
|
1.0
|
CD2
|
8:HIS39
|
4.3
|
17.7
|
1.0
|
C2B
|
9:BCL101
|
4.3
|
13.6
|
1.0
|
C3A
|
8:BCL101
|
4.3
|
18.5
|
1.0
|
CAB
|
9:BCL101
|
4.3
|
13.6
|
1.0
|
C2A
|
8:BCL101
|
4.3
|
18.5
|
1.0
|
C2C
|
8:BCL101
|
4.3
|
18.5
|
1.0
|
CD1
|
7:ILE31
|
4.4
|
18.0
|
1.0
|
C3C
|
8:BCL101
|
4.4
|
18.5
|
1.0
|
C3B
|
9:BCL101
|
4.6
|
13.6
|
1.0
|
CG2
|
7:ILE31
|
4.8
|
18.0
|
1.0
|
CBD
|
8:BCL101
|
4.8
|
18.5
|
1.0
|
CMA
|
8:BCL101
|
4.8
|
18.5
|
1.0
|
ND1
|
8:HIS39
|
4.9
|
17.7
|
1.0
|
|
Magnesium binding site 7 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 7 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
9:Mg101
b:13.6
occ:1.00
|
MG
|
9:BCL101
|
0.0
|
13.6
|
1.0
|
NA
|
9:BCL101
|
2.0
|
13.6
|
1.0
|
ND
|
9:BCL101
|
2.0
|
13.6
|
1.0
|
NB
|
9:BCL101
|
2.0
|
13.6
|
1.0
|
NC
|
9:BCL101
|
2.1
|
13.6
|
1.0
|
C4D
|
9:BCL101
|
2.9
|
13.6
|
1.0
|
C4A
|
9:BCL101
|
3.0
|
13.6
|
1.0
|
C1C
|
9:BCL101
|
3.0
|
13.6
|
1.0
|
NE2
|
9:HIS32
|
3.0
|
8.7
|
1.0
|
C1B
|
9:BCL101
|
3.0
|
13.6
|
1.0
|
C1A
|
9:BCL101
|
3.0
|
13.6
|
1.0
|
C4B
|
9:BCL101
|
3.1
|
13.6
|
1.0
|
C4C
|
9:BCL101
|
3.1
|
13.6
|
1.0
|
C1D
|
9:BCL101
|
3.2
|
13.6
|
1.0
|
CHB
|
9:BCL101
|
3.3
|
13.6
|
1.0
|
CHA
|
9:BCL101
|
3.3
|
13.6
|
1.0
|
CHC
|
9:BCL101
|
3.4
|
13.6
|
1.0
|
CHD
|
9:BCL101
|
3.6
|
13.6
|
1.0
|
CMB
|
8:BCL101
|
3.7
|
18.5
|
1.0
|
CE1
|
9:HIS32
|
3.7
|
8.7
|
1.0
|
CBB
|
8:BCL101
|
3.8
|
18.5
|
1.0
|
C3D
|
9:BCL101
|
4.1
|
13.6
|
1.0
|
CD2
|
9:HIS32
|
4.2
|
8.7
|
1.0
|
C2B
|
9:BCL101
|
4.2
|
13.6
|
1.0
|
C3B
|
9:BCL101
|
4.3
|
13.6
|
1.0
|
C2D
|
9:BCL101
|
4.3
|
13.6
|
1.0
|
C3A
|
9:BCL101
|
4.4
|
13.6
|
1.0
|
C2C
|
9:BCL101
|
4.4
|
13.6
|
1.0
|
C2A
|
9:BCL101
|
4.4
|
13.6
|
1.0
|
C3C
|
9:BCL101
|
4.5
|
13.6
|
1.0
|
C2B
|
8:BCL101
|
4.5
|
18.5
|
1.0
|
C18
|
0:SPO102
|
4.6
|
14.5
|
1.0
|
C20
|
0:SPO102
|
4.7
|
14.5
|
1.0
|
CAB
|
8:BCL101
|
4.8
|
18.5
|
1.0
|
CBD
|
9:BCL101
|
4.8
|
13.6
|
1.0
|
C3B
|
8:BCL101
|
4.9
|
18.5
|
1.0
|
CMA
|
9:BCL101
|
5.0
|
13.6
|
1.0
|
ND1
|
9:HIS32
|
5.0
|
8.7
|
1.0
|
|
Magnesium binding site 8 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 8 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg101
b:10.1
occ:1.00
|
MG
|
A:BCL101
|
0.0
|
10.1
|
1.0
|
NA
|
A:BCL101
|
2.0
|
10.1
|
1.0
|
ND
|
A:BCL101
|
2.0
|
10.1
|
1.0
|
NB
|
A:BCL101
|
2.1
|
10.1
|
1.0
|
NC
|
A:BCL101
|
2.1
|
10.1
|
1.0
|
C4D
|
A:BCL101
|
2.9
|
10.1
|
1.0
|
C4A
|
A:BCL101
|
3.0
|
10.1
|
1.0
|
C1C
|
A:BCL101
|
3.0
|
10.1
|
1.0
|
C1A
|
A:BCL101
|
3.0
|
10.1
|
1.0
|
C1B
|
A:BCL101
|
3.0
|
10.1
|
1.0
|
C4B
|
A:BCL101
|
3.1
|
10.1
|
1.0
|
NE2
|
A:HIS32
|
3.1
|
9.5
|
1.0
|
C1D
|
A:BCL101
|
3.1
|
10.1
|
1.0
|
C4C
|
A:BCL101
|
3.2
|
10.1
|
1.0
|
CHB
|
A:BCL101
|
3.3
|
10.1
|
1.0
|
CHA
|
A:BCL101
|
3.3
|
10.1
|
1.0
|
CHC
|
A:BCL101
|
3.4
|
10.1
|
1.0
|
CHD
|
A:BCL101
|
3.6
|
10.1
|
1.0
|
CBB
|
0:BCL101
|
3.8
|
11.8
|
1.0
|
CE1
|
A:HIS32
|
3.8
|
9.5
|
1.0
|
C3D
|
A:BCL101
|
4.1
|
10.1
|
1.0
|
CD2
|
A:HIS32
|
4.2
|
9.5
|
1.0
|
C2B
|
A:BCL101
|
4.2
|
10.1
|
1.0
|
C3B
|
A:BCL101
|
4.3
|
10.1
|
1.0
|
C2D
|
A:BCL101
|
4.3
|
10.1
|
1.0
|
CMB
|
0:BCL101
|
4.3
|
11.8
|
1.0
|
C3A
|
A:BCL101
|
4.4
|
10.1
|
1.0
|
C2A
|
A:BCL101
|
4.4
|
10.1
|
1.0
|
C2C
|
A:BCL101
|
4.4
|
10.1
|
1.0
|
C3C
|
A:BCL101
|
4.5
|
10.1
|
1.0
|
CAB
|
0:BCL101
|
4.8
|
11.8
|
1.0
|
C2B
|
0:BCL101
|
4.8
|
11.8
|
1.0
|
CBD
|
A:BCL101
|
4.8
|
10.1
|
1.0
|
|
Magnesium binding site 9 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 9 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg101
b:9.6
occ:1.00
|
MG
|
B:BCL101
|
0.0
|
9.6
|
1.0
|
NA
|
B:BCL101
|
2.0
|
9.6
|
1.0
|
ND
|
B:BCL101
|
2.0
|
9.6
|
1.0
|
NB
|
B:BCL101
|
2.0
|
9.6
|
1.0
|
NC
|
B:BCL101
|
2.1
|
9.6
|
1.0
|
C4D
|
B:BCL101
|
2.9
|
9.6
|
1.0
|
NE2
|
B:HIS39
|
2.9
|
5.7
|
1.0
|
C4A
|
B:BCL101
|
3.0
|
9.6
|
1.0
|
C1C
|
B:BCL101
|
3.0
|
9.6
|
1.0
|
C1A
|
B:BCL101
|
3.0
|
9.6
|
1.0
|
C1B
|
B:BCL101
|
3.0
|
9.6
|
1.0
|
C4B
|
B:BCL101
|
3.1
|
9.6
|
1.0
|
C4C
|
B:BCL101
|
3.1
|
9.6
|
1.0
|
C1D
|
B:BCL101
|
3.1
|
9.6
|
1.0
|
CHB
|
B:BCL101
|
3.3
|
9.6
|
1.0
|
CHA
|
B:BCL101
|
3.3
|
9.6
|
1.0
|
CHC
|
B:BCL101
|
3.4
|
9.6
|
1.0
|
CHD
|
B:BCL101
|
3.6
|
9.6
|
1.0
|
CMB
|
D:BCL102
|
3.7
|
10.1
|
1.0
|
CE1
|
B:HIS39
|
3.8
|
5.7
|
1.0
|
CBB
|
D:BCL102
|
3.8
|
10.1
|
1.0
|
CD2
|
B:HIS39
|
3.9
|
5.7
|
1.0
|
C3D
|
B:BCL101
|
4.1
|
9.6
|
1.0
|
C2B
|
B:BCL101
|
4.2
|
9.6
|
1.0
|
C3B
|
B:BCL101
|
4.2
|
9.6
|
1.0
|
C2D
|
B:BCL101
|
4.3
|
9.6
|
1.0
|
C3A
|
B:BCL101
|
4.3
|
9.6
|
1.0
|
C2C
|
B:BCL101
|
4.3
|
9.6
|
1.0
|
C2A
|
B:BCL101
|
4.4
|
9.6
|
1.0
|
C3C
|
B:BCL101
|
4.4
|
9.6
|
1.0
|
C2B
|
D:BCL102
|
4.4
|
10.1
|
1.0
|
CAB
|
D:BCL102
|
4.5
|
10.1
|
1.0
|
CD1
|
A:ILE31
|
4.5
|
7.5
|
1.0
|
CMA
|
B:BCL101
|
4.7
|
9.6
|
1.0
|
C3B
|
D:BCL102
|
4.7
|
10.1
|
1.0
|
CG2
|
A:ILE31
|
4.8
|
7.5
|
1.0
|
CBD
|
B:BCL101
|
4.8
|
9.6
|
1.0
|
ND1
|
B:HIS39
|
5.0
|
5.7
|
1.0
|
|
Magnesium binding site 10 out
of 34 in 8ygl
Go back to
Magnesium Binding Sites List in 8ygl
Magnesium binding site 10 out
of 34 in the Rhodobacter Blasticus Rc-LH1 Monomer
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Rhodobacter Blasticus Rc-LH1 Monomer within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg101
b:46.6
occ:1.00
|
MG
|
C:BCL101
|
0.0
|
46.6
|
1.0
|
NA
|
C:BCL101
|
2.0
|
46.6
|
1.0
|
ND
|
C:BCL101
|
2.0
|
46.6
|
1.0
|
NB
|
C:BCL101
|
2.0
|
46.6
|
1.0
|
NC
|
C:BCL101
|
2.1
|
46.6
|
1.0
|
NE2
|
C:HIS44
|
2.9
|
39.8
|
1.0
|
C4D
|
C:BCL101
|
2.9
|
46.6
|
1.0
|
C4A
|
C:BCL101
|
3.0
|
46.6
|
1.0
|
C1C
|
C:BCL101
|
3.0
|
46.6
|
1.0
|
C1A
|
C:BCL101
|
3.0
|
46.6
|
1.0
|
C1B
|
C:BCL101
|
3.0
|
46.6
|
1.0
|
C4B
|
C:BCL101
|
3.1
|
46.6
|
1.0
|
C4C
|
C:BCL101
|
3.1
|
46.6
|
1.0
|
C1D
|
C:BCL101
|
3.1
|
46.6
|
1.0
|
CHB
|
C:BCL101
|
3.3
|
46.6
|
1.0
|
CHA
|
C:BCL101
|
3.3
|
46.6
|
1.0
|
CHC
|
C:BCL101
|
3.4
|
46.6
|
1.0
|
CBB
|
3:BCL101
|
3.5
|
60.8
|
1.0
|
CHD
|
C:BCL101
|
3.6
|
46.6
|
1.0
|
CMB
|
3:BCL101
|
3.7
|
60.8
|
1.0
|
CD2
|
C:HIS44
|
3.7
|
39.8
|
1.0
|
CE1
|
C:HIS44
|
3.9
|
39.8
|
1.0
|
C3D
|
C:BCL101
|
4.1
|
46.6
|
1.0
|
C2B
|
C:BCL101
|
4.2
|
46.6
|
1.0
|
C2B
|
3:BCL101
|
4.2
|
60.8
|
1.0
|
C3B
|
C:BCL101
|
4.2
|
46.6
|
1.0
|
CAB
|
3:BCL101
|
4.3
|
60.8
|
1.0
|
C2D
|
C:BCL101
|
4.3
|
46.6
|
1.0
|
C3A
|
C:BCL101
|
4.3
|
46.6
|
1.0
|
C2C
|
C:BCL101
|
4.3
|
46.6
|
1.0
|
C2A
|
C:BCL101
|
4.4
|
46.6
|
1.0
|
CD1
|
W:ILE31
|
4.4
|
37.2
|
1.0
|
C3C
|
C:BCL101
|
4.5
|
46.6
|
1.0
|
C3B
|
3:BCL101
|
4.5
|
60.8
|
1.0
|
CG2
|
W:ILE31
|
4.7
|
37.2
|
1.0
|
CMA
|
C:BCL101
|
4.8
|
46.6
|
1.0
|
CBD
|
C:BCL101
|
4.8
|
46.6
|
1.0
|
CG
|
C:HIS44
|
4.9
|
39.8
|
1.0
|
ND1
|
C:HIS44
|
5.0
|
39.8
|
1.0
|
|
Reference:
P.Wang,
B.M.Christianson,
D.Ugurlar,
R.Mao,
Y.Zhang,
Z.K.Liu,
Y.Y.Zhang,
A.M.Gardner,
J.Gao,
Y.Z.Zhang,
L.N.Liu.
Architectures of Photosynthetic Rc-LH1 Supercomplexes From Rhodobacter Blasticus. Sci Adv V. 10 P6678 2024.
ISSN: ESSN 2375-2548
PubMed: 39383221
DOI: 10.1126/SCIADV.ADP6678
Page generated: Fri Aug 15 21:27:13 2025
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