Magnesium in PDB 8yih: Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State

All present enzymatic activity of Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State:
3.1.21.1; 3.1.26.3; 3.6.1.3;

The binding sites of Magnesium atom in the Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State (pdb code 8yih). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State, PDB code: 8yih:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1801 b:143.2 occ:1.00 O3B A:ADP1802 1.9 180.8 1.0 O2B A:ADP1802 2.4 180.8 1.0 PB A:ADP1802 2.5 180.8 1.0 NZ A:LYS34 2.7 163.3 1.0 O3A A:ADP1802 3.3 180.8 1.0 CE A:LYS34 3.9 163.3 1.0 O1B A:ADP1802 3.9 180.8 1.0 O2A A:ADP1802 4.0 180.8 1.0 PA A:ADP1802 4.1 180.8 1.0 NE2 A:GLN73 4.3 162.4 1.0 O1A A:ADP1802 4.5 180.8 1.0 CG A:LYS34 4.7 163.3 1.0 O A:GLY467 4.8 181.7 1.0 CD A:LYS34 4.9 163.3 1.0 CB A:THR35 4.9 170.0 1.0

Magnesium binding site 2 out of 2 in the Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dmdcr-2/Loqspd/SLM1 in Pre-Dicing State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1803 b:214.4 occ:1.00 CZ A:PHE450 2.3 187.7 1.0 CB A:CYS387 2.4 191.4 1.0 CE2 A:PHE450 2.9 187.7 1.0 SG A:CYS387 3.1 191.4 1.0 CE1 A:PHE450 3.1 187.7 1.0 CA A:CYS387 3.4 191.4 1.0 SG A:CYS473 3.5 206.0 1.0 C A:CYS387 3.7 191.4 1.0 NE2 A:GLN471 3.8 191.8 1.0 O A:CYS387 3.9 191.4 1.0 CD2 A:PHE450 4.0 187.7 1.0 CD1 A:PHE450 4.1 187.7 1.0 CG A:PHE450 4.5 187.7 1.0 N A:CYS388 4.5 168.7 1.0 CD A:GLN471 4.5 191.8 1.0 O A:ASN456 4.5 188.8 1.0 CG A:GLN471 4.6 191.8 1.0 CB A:CYS473 4.6 206.0 1.0 N A:CYS387 4.7 191.4 1.0 CD2 A:LEU389 4.8 159.3 1.0

N.Cao, S.Su, J.Wang, J.Ma, H.-W.Wang. Structural Basic of Endo-Sirna Processing By Drosophila Dcr-2 and Loqs-Pd To Be Published.