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Magnesium in PDB 8yly: Structural Basis of Elongation Factor Tu in Regulating Photoinhibition in Synechococcus Sp. Pcc 7942.

Protein crystallography data

The structure of Structural Basis of Elongation Factor Tu in Regulating Photoinhibition in Synechococcus Sp. Pcc 7942., PDB code: 8yly was solved by C.Cheng, H.Ma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.47 / 1.49
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 55.244, 86.938, 61.255, 90, 95.87, 90
R / Rfree (%) 17.6 / 19.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structural Basis of Elongation Factor Tu in Regulating Photoinhibition in Synechococcus Sp. Pcc 7942. (pdb code 8yly). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structural Basis of Elongation Factor Tu in Regulating Photoinhibition in Synechococcus Sp. Pcc 7942., PDB code: 8yly:

Magnesium binding site 1 out of 1 in 8yly

Go back to Magnesium Binding Sites List in 8yly
Magnesium binding site 1 out of 1 in the Structural Basis of Elongation Factor Tu in Regulating Photoinhibition in Synechococcus Sp. Pcc 7942.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Basis of Elongation Factor Tu in Regulating Photoinhibition in Synechococcus Sp. Pcc 7942. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg512

b:15.5
occ:1.00
OG1 A:THR26 2.0 16.6 1.0
O A:HOH688 2.0 17.8 1.0
O A:HOH696 2.1 16.6 1.0
O3B A:GDP503 2.1 20.0 1.0
O A:HOH830 2.1 16.2 1.0
O A:HOH699 2.1 16.5 1.0
CB A:THR26 3.2 15.8 1.0
PB A:GDP503 3.3 20.0 1.0
O2B A:GDP503 3.5 20.0 1.0
N A:THR26 3.8 13.8 1.0
OD2 A:ASP81 3.9 19.9 1.0
O A:CYS82 4.0 17.2 1.0
CA A:THR26 4.1 13.7 1.0
CG2 A:THR26 4.2 17.0 1.0
O2A A:GDP503 4.2 20.0 1.0
O A:HOH756 4.2 20.4 1.0
O A:HOH651 4.3 34.1 1.0
O3A A:GDP503 4.3 20.0 1.0
OD1 A:ASP51 4.3 27.1 1.0
O1B A:GDP503 4.3 20.0 1.0
OD1 A:ASP81 4.4 18.0 1.0
CA A:PRO83 4.4 20.6 1.0
O A:PRO83 4.5 21.4 1.0
PA A:GDP503 4.6 20.0 1.0
CG A:ASP81 4.6 18.0 1.0
O A:HOH670 4.6 29.2 1.0
C A:CYS82 4.7 16.8 1.0
CB A:LYS25 4.7 13.9 1.0
O1A A:GDP503 4.7 20.0 1.0
C A:LYS25 4.9 13.7 1.0
CE A:LYS25 5.0 16.0 1.0
C A:PRO83 5.0 20.4 1.0
N A:PRO83 5.0 19.4 1.0

Reference:

C.Chen, H.Ma. Structural Basis of Elongation Factor Tu in Regulating Photoinhibition in Synechococcus Sp. Pcc 7942 To Be Published.
Page generated: Fri Aug 15 21:33:14 2025

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