Magnesium in PDB 8yqg: Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein

The structure of Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein, PDB code: 8yqg was solved by Y.Kitaoku, P.Sitthisak, R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.68 / 1.77
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	76.233, 120.758, 44.807, 90, 104.31, 90
R / Rfree (%)	19 / 22.8

The binding sites of Magnesium atom in the Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein (pdb code 8yqg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein, PDB code: 8yqg:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:24.9 occ:0.50 O A:PHE167 2.2 17.9 1.0 OD1 A:ASN166 2.4 26.2 1.0 O A:HOH411 2.6 22.9 1.0 C A:PHE167 3.3 20.4 1.0 CG A:ASN166 3.4 22.3 1.0 O A:HOH454 3.8 18.6 1.0 CA A:HIS168 3.9 15.1 1.0 ND2 A:ASN166 3.9 24.2 1.0 N A:HIS168 4.0 11.8 1.0 N A:PHE167 4.1 16.2 1.0 CA A:PHE167 4.3 13.5 1.0 ND1 A:HIS168 4.3 17.4 1.0 CB A:HIS168 4.4 15.8 1.0 CD A:PRO169 4.6 21.7 1.0 C A:ASN166 4.6 19.9 1.0 CB A:ASN166 4.7 21.1 1.0 CG A:HIS168 4.8 16.1 1.0 CA A:ASN166 4.9 16.8 1.0 CB A:PHE167 4.9 17.1 1.0

Magnesium binding site 2 out of 2 in the Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Dimeric Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:17.3 occ:0.50 O B:PHE167 2.3 13.0 1.0 OD1 B:ASN166 2.3 14.6 1.0 O B:HOH460 2.3 19.8 0.5 C B:PHE167 3.2 15.6 1.0 CG B:ASN166 3.3 17.9 1.0 CA B:HIS168 3.7 12.7 1.0 ND2 B:ASN166 3.8 19.3 1.0 N B:HIS168 3.9 11.5 1.0 O B:HOH426 3.9 15.3 1.0 N B:PHE167 4.1 13.9 1.0 CB B:HIS168 4.2 18.3 1.0 CA B:PHE167 4.3 13.4 1.0 ND1 B:HIS168 4.4 18.8 1.0 CD B:PRO169 4.4 17.8 1.0 C B:ASN166 4.6 13.6 1.0 CB B:ASN166 4.6 12.6 1.0 CG B:HIS168 4.8 13.0 1.0 CA B:ASN166 4.8 12.9 1.0 CB B:PHE167 5.0 12.8 1.0 C B:HIS168 5.0 13.4 1.0

P.Sitthisak, Y.Kitaoku, R.C.Robinson. Structure of the Longin Domain From A Lokiarchaeota Archaeon Roadblock-Longin Protein To Be Published.