Magnesium in PDB 8zeh: Psi-Fcpi-L in Thalassiosira Pseudonana

All present enzymatic activity of Psi-Fcpi-L in Thalassiosira Pseudonana:
1.97.1.12;

The structure of Psi-Fcpi-L in Thalassiosira Pseudonana also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 170; Page 18, Binding sites: 171 - 180; Page 19, Binding sites: 181 - 190; Page 20, Binding sites: 191 - 200; Page 21, Binding sites: 201 - 210; Page 22, Binding sites: 211 - 220; Page 23, Binding sites: 221 - 230; Page 24, Binding sites: 231 - 240; Page 25, Binding sites: 241 - 244;

Binding sites:

The binding sites of Magnesium atom in the Psi-Fcpi-L in Thalassiosira Pseudonana (pdb code 8zeh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 244 binding sites of Magnesium where determined in the Psi-Fcpi-L in Thalassiosira Pseudonana, PDB code: 8zeh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg203 b:113.1 occ:1.00 MG A:CLA203 0.0 113.1 1.0 NB A:CLA203 2.0 113.1 1.0 ND A:CLA203 2.0 113.1 1.0 NC A:CLA203 2.1 113.1 1.0 NA A:CLA203 2.1 113.1 1.0 OE2 A:GLU46 2.5 110.9 1.0 C4D A:CLA203 2.9 113.1 1.0 C1B A:CLA203 3.0 113.1 1.0 C4A A:CLA203 3.0 113.1 1.0 C4B A:CLA203 3.1 113.1 1.0 C1C A:CLA203 3.1 113.1 1.0 C4C A:CLA203 3.1 113.1 1.0 C1A A:CLA203 3.2 113.1 1.0 C1D A:CLA203 3.2 113.1 1.0 CD A:GLU46 3.3 110.9 1.0 CHB A:CLA203 3.4 113.1 1.0 CHC A:CLA203 3.4 113.1 1.0 CHA A:CLA203 3.5 113.1 1.0 CHD A:CLA203 3.5 113.1 1.0 C40 A:DD6202 3.6 80.0 1.0 OE1 A:GLU46 3.9 110.9 1.0 NH2 A:ARG150 3.9 117.2 1.0 C41 A:DD6202 4.2 80.0 1.0 NE A:ARG150 4.2 117.2 1.0 CZ A:ARG150 4.3 117.2 1.0 C3D A:CLA203 4.3 113.1 1.0 CG A:GLU46 4.3 110.9 1.0 C2B A:CLA203 4.3 113.1 1.0 C3B A:CLA203 4.3 113.1 1.0 C2C A:CLA203 4.3 113.1 1.0 C2D A:CLA203 4.4 113.1 1.0 C3C A:CLA203 4.4 113.1 1.0 C3A A:CLA203 4.4 113.1 1.0 C2A A:CLA203 4.5 113.1 1.0 C32 A:DD6202 4.6 80.0 1.0 CBD A:CLA203 4.9 113.1 1.0

Magnesium binding site 2 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg204 b:109.1 occ:1.00 MG A:CLA204 0.0 109.1 1.0 NB A:CLA204 2.0 109.1 1.0 ND A:CLA204 2.0 109.1 1.0 NC A:CLA204 2.1 109.1 1.0 NA A:CLA204 2.1 109.1 1.0 NE2 A:HIS49 2.5 110.1 1.0 C4D A:CLA204 2.9 109.1 1.0 C1B A:CLA204 3.0 109.1 1.0 C4A A:CLA204 3.0 109.1 1.0 C4B A:CLA204 3.0 109.1 1.0 C1C A:CLA204 3.1 109.1 1.0 C4C A:CLA204 3.1 109.1 1.0 C1A A:CLA204 3.1 109.1 1.0 C1D A:CLA204 3.1 109.1 1.0 CHB A:CLA204 3.4 109.1 1.0 CHC A:CLA204 3.4 109.1 1.0 CD2 A:HIS49 3.4 110.1 1.0 CHA A:CLA204 3.4 109.1 1.0 CE1 A:HIS49 3.5 110.1 1.0 CHD A:CLA204 3.5 109.1 1.0 C11 A:CLA207 3.6 107.1 1.0 C3D A:CLA204 4.2 109.1 1.0 C13 A:CLA207 4.2 107.1 1.0 C2B A:CLA204 4.2 109.1 1.0 C3B A:CLA204 4.3 109.1 1.0 C2C A:CLA204 4.3 109.1 1.0 C2D A:CLA204 4.3 109.1 1.0 C3C A:CLA204 4.3 109.1 1.0 C3A A:CLA204 4.4 109.1 1.0 C2A A:CLA204 4.4 109.1 1.0 ND1 A:HIS49 4.5 110.1 1.0 C16 A:CLA207 4.5 107.1 1.0 CG A:HIS49 4.6 110.1 1.0 C12 A:CLA207 4.6 107.1 1.0 C9 A:CLA207 4.6 107.1 1.0 C10 A:CLA207 4.7 107.1 1.0 C15 A:CLA207 4.8 107.1 1.0 CBD A:CLA204 4.9 109.1 1.0

Magnesium binding site 3 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg205 b:118.3 occ:1.00 MG A:CLA205 0.0 118.3 1.0 NB A:CLA205 2.0 118.3 1.0 ND A:CLA205 2.0 118.3 1.0 NA A:CLA205 2.1 118.3 1.0 NC A:CLA205 2.1 118.3 1.0 NE2 A:GLN63 2.4 123.9 1.0 C4D A:CLA205 2.9 118.3 1.0 C1B A:CLA205 3.0 118.3 1.0 C4A A:CLA205 3.0 118.3 1.0 C4B A:CLA205 3.0 118.3 1.0 C1C A:CLA205 3.1 118.3 1.0 C1A A:CLA205 3.1 118.3 1.0 C4C A:CLA205 3.1 118.3 1.0 C1D A:CLA205 3.1 118.3 1.0 CHB A:CLA205 3.4 118.3 1.0 CHC A:CLA205 3.4 118.3 1.0 CHA A:CLA205 3.4 118.3 1.0 CD A:GLN63 3.5 123.9 1.0 CHD A:CLA205 3.5 118.3 1.0 C2 A:CLA205 3.7 118.3 1.0 O1A A:CLA205 3.7 118.3 1.0 OE1 A:GLN63 3.9 123.9 1.0 CGA A:CLA205 4.2 118.3 1.0 O2A A:CLA205 4.2 118.3 1.0 C3D A:CLA205 4.2 118.3 1.0 C2B A:CLA205 4.3 118.3 1.0 C3B A:CLA205 4.3 118.3 1.0 C5 A:CLA205 4.3 118.3 1.0 C2C A:CLA205 4.3 118.3 1.0 C2D A:CLA205 4.3 118.3 1.0 C3C A:CLA205 4.3 118.3 1.0 C3A A:CLA205 4.4 118.3 1.0 C3 A:CLA205 4.4 118.3 1.0 C2A A:CLA205 4.4 118.3 1.0 C1 A:CLA205 4.6 118.3 1.0 CG A:GLN63 4.7 123.9 1.0 CBD A:CLA205 4.9 118.3 1.0

Magnesium binding site 4 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg206 b:109.0 occ:1.00 MG A:CLA206 0.0 109.0 1.0 NB A:CLA206 2.0 109.0 1.0 ND A:CLA206 2.0 109.0 1.0 NC A:CLA206 2.1 109.0 1.0 NA A:CLA206 2.1 109.0 1.0 OE1 A:GLN95 2.6 109.5 1.0 C4D A:CLA206 2.9 109.0 1.0 C1B A:CLA206 3.0 109.0 1.0 C4A A:CLA206 3.0 109.0 1.0 C4B A:CLA206 3.1 109.0 1.0 C1C A:CLA206 3.1 109.0 1.0 CD A:GLN95 3.1 109.5 1.0 C4C A:CLA206 3.1 109.0 1.0 C1D A:CLA206 3.2 109.0 1.0 C1A A:CLA206 3.2 109.0 1.0 CHB A:CLA206 3.4 109.0 1.0 CHC A:CLA206 3.4 109.0 1.0 NE2 A:GLN95 3.5 109.5 1.0 CHA A:CLA206 3.5 109.0 1.0 CHD A:CLA206 3.5 109.0 1.0 CG A:GLN95 4.0 109.5 1.0 C3D A:CLA206 4.3 109.0 1.0 C2B A:CLA206 4.3 109.0 1.0 C3B A:CLA206 4.3 109.0 1.0 NE1 A:TRP99 4.3 106.1 1.0 C2C A:CLA206 4.3 109.0 1.0 C2D A:CLA206 4.4 109.0 1.0 C3C A:CLA206 4.4 109.0 1.0 C3A A:CLA206 4.4 109.0 1.0 C2A A:CLA206 4.5 109.0 1.0 CB A:GLN95 4.7 109.5 1.0 CBD A:CLA206 4.9 109.0 1.0

Magnesium binding site 5 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg207 b:107.1 occ:1.00 MG A:CLA207 0.0 107.1 1.0 NB A:CLA207 2.0 107.1 1.0 ND A:CLA207 2.0 107.1 1.0 NA A:CLA207 2.1 107.1 1.0 NC A:CLA207 2.1 107.1 1.0 OD2 A:ASP104 2.3 103.3 1.0 C4D A:CLA207 2.9 107.1 1.0 C1B A:CLA207 3.0 107.1 1.0 C4A A:CLA207 3.0 107.1 1.0 C4B A:CLA207 3.0 107.1 1.0 C1C A:CLA207 3.1 107.1 1.0 C1A A:CLA207 3.1 107.1 1.0 C4C A:CLA207 3.1 107.1 1.0 C1D A:CLA207 3.1 107.1 1.0 CHB A:CLA207 3.4 107.1 1.0 CHC A:CLA207 3.4 107.1 1.0 CG A:ASP104 3.4 103.3 1.0 CHA A:CLA207 3.4 107.1 1.0 CHD A:CLA207 3.5 107.1 1.0 NH2 A:ARG48 3.9 109.3 1.0 CB A:ASP104 4.1 103.3 1.0 C3D A:CLA207 4.2 107.1 1.0 C2B A:CLA207 4.2 107.1 1.0 C3B A:CLA207 4.3 107.1 1.0 C2C A:CLA207 4.3 107.1 1.0 C2D A:CLA207 4.3 107.1 1.0 C3C A:CLA207 4.3 107.1 1.0 C3A A:CLA207 4.4 107.1 1.0 OD1 A:ASP104 4.4 103.3 1.0 CMD A:CLA204 4.4 109.1 1.0 C2A A:CLA207 4.4 107.1 1.0 CZ A:ARG48 4.9 109.3 1.0 CBD A:CLA207 4.9 107.1 1.0

Magnesium binding site 6 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg208 b:115.5 occ:1.00 MG A:CLA208 0.0 115.5 1.0 NB A:CLA208 2.0 115.5 1.0 ND A:CLA208 2.0 115.5 1.0 NA A:CLA208 2.1 115.5 1.0 NC A:CLA208 2.1 115.5 1.0 OE2 A:GLU145 2.3 119.6 1.0 C4D A:CLA208 2.9 115.5 1.0 CD A:GLU145 2.9 119.6 1.0 C1B A:CLA208 3.0 115.5 1.0 C4A A:CLA208 3.0 115.5 1.0 C4B A:CLA208 3.0 115.5 1.0 C1C A:CLA208 3.1 115.5 1.0 C4C A:CLA208 3.1 115.5 1.0 C1A A:CLA208 3.1 115.5 1.0 C1D A:CLA208 3.1 115.5 1.0 OE1 A:GLU145 3.4 119.6 1.0 CHB A:CLA208 3.4 115.5 1.0 CHC A:CLA208 3.4 115.5 1.0 CHA A:CLA208 3.4 115.5 1.0 C6 A:CLA208 3.5 115.5 1.0 CHD A:CLA208 3.5 115.5 1.0 CG A:GLU145 4.0 119.6 1.0 C8 A:CLA208 4.2 115.5 1.0 NE A:ARG51 4.2 112.5 1.0 C3D A:CLA208 4.2 115.5 1.0 C2B A:CLA208 4.3 115.5 1.0 C3B A:CLA208 4.3 115.5 1.0 NH2 A:ARG51 4.3 112.5 1.0 C2C A:CLA208 4.3 115.5 1.0 C2D A:CLA208 4.3 115.5 1.0 C3C A:CLA208 4.3 115.5 1.0 C3A A:CLA208 4.4 115.5 1.0 C2 A:CLA208 4.4 115.5 1.0 C7 A:CLA208 4.4 115.5 1.0 C2A A:CLA208 4.4 115.5 1.0 CZ A:ARG51 4.6 112.5 1.0 C5 A:CLA208 4.6 115.5 1.0 C9 A:CLA208 4.7 115.5 1.0 C3 A:CLA208 4.8 115.5 1.0 CBA A:CLA208 4.8 115.5 1.0 CBD A:CLA208 4.9 115.5 1.0 CB A:GLU145 5.0 119.6 1.0

Magnesium binding site 7 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg209 b:136.3 occ:1.00 MG A:KC1209 0.0 136.3 1.0 ND A:KC1209 1.9 136.3 1.0 NB A:KC1209 2.0 136.3 1.0 NC A:KC1209 2.0 136.3 1.0 NA A:KC1209 2.0 136.3 1.0 C4D A:KC1209 2.9 136.3 1.0 C1B A:KC1209 2.9 136.3 1.0 C4B A:KC1209 3.0 136.3 1.0 C1D A:KC1209 3.0 136.3 1.0 C4A A:KC1209 3.0 136.3 1.0 C4C A:KC1209 3.0 136.3 1.0 C1C A:KC1209 3.0 136.3 1.0 C1A A:KC1209 3.1 136.3 1.0 CHB A:KC1209 3.4 136.3 1.0 CHC A:KC1209 3.4 136.3 1.0 CHD A:KC1209 3.4 136.3 1.0 CHA A:KC1209 3.4 136.3 1.0 C3D A:KC1209 4.1 136.3 1.0 C2D A:KC1209 4.1 136.3 1.0 C2B A:KC1209 4.2 136.3 1.0 C3B A:KC1209 4.2 136.3 1.0 C3A A:KC1209 4.3 136.3 1.0 C3C A:KC1209 4.3 136.3 1.0 C2C A:KC1209 4.3 136.3 1.0 C2A A:KC1209 4.3 136.3 1.0 ND2 A:ASN148 4.5 121.8 1.0 OD1 A:ASN148 4.6 121.8 1.0 CG A:ASN148 4.7 121.8 1.0 CBD A:KC1209 4.9 136.3 1.0

Magnesium binding site 8 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg210 b:117.3 occ:1.00 MG A:CLA210 0.0 117.3 1.0 NB A:CLA210 2.0 117.3 1.0 ND A:CLA210 2.0 117.3 1.0 NC A:CLA210 2.1 117.3 1.0 NA A:CLA210 2.1 117.3 1.0 NE2 A:HIS85 2.4 122.6 1.0 C4D A:CLA210 2.9 117.3 1.0 C1B A:CLA210 3.0 117.3 1.0 C4B A:CLA210 3.0 117.3 1.0 C4A A:CLA210 3.0 117.3 1.0 C1C A:CLA210 3.1 117.3 1.0 C4C A:CLA210 3.1 117.3 1.0 C1A A:CLA210 3.1 117.3 1.0 C1D A:CLA210 3.1 117.3 1.0 CE1 A:HIS85 3.3 122.6 1.0 CHB A:CLA210 3.4 117.3 1.0 CHA A:CLA210 3.4 117.3 1.0 CHC A:CLA210 3.4 117.3 1.0 CD2 A:HIS85 3.4 122.6 1.0 CHD A:CLA210 3.5 117.3 1.0 C3D A:CLA210 4.2 117.3 1.0 C2B A:CLA210 4.3 117.3 1.0 C3B A:CLA210 4.3 117.3 1.0 C2C A:CLA210 4.3 117.3 1.0 C3C A:CLA210 4.3 117.3 1.0 C2D A:CLA210 4.3 117.3 1.0 C3A A:CLA210 4.4 117.3 1.0 C2A A:CLA210 4.4 117.3 1.0 ND1 A:HIS85 4.4 122.6 1.0 CG A:HIS85 4.5 122.6 1.0 CBD A:CLA210 4.9 117.3 1.0 O2A A:CLA210 4.9 117.3 1.0 CBA A:CLA210 4.9 117.3 1.0

Magnesium binding site 9 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg211 b:115.9 occ:1.00 MG A:CLA211 0.0 115.9 1.0 NB A:CLA211 2.0 115.9 1.0 ND A:CLA211 2.0 115.9 1.0 NA A:CLA211 2.1 115.9 1.0 NC A:CLA211 2.1 115.9 1.0 C4D A:CLA211 2.9 115.9 1.0 C1B A:CLA211 3.0 115.9 1.0 C4A A:CLA211 3.0 115.9 1.0 C4B A:CLA211 3.0 115.9 1.0 C1C A:CLA211 3.1 115.9 1.0 C1A A:CLA211 3.1 115.9 1.0 C4C A:CLA211 3.1 115.9 1.0 C1D A:CLA211 3.1 115.9 1.0 CHB A:CLA211 3.4 115.9 1.0 CHC A:CLA211 3.4 115.9 1.0 CHA A:CLA211 3.4 115.9 1.0 CHD A:CLA211 3.5 115.9 1.0 C3D A:CLA211 4.2 115.9 1.0 C2B A:CLA211 4.3 115.9 1.0 C3B A:CLA211 4.3 115.9 1.0 C2C A:CLA211 4.3 115.9 1.0 C2D A:CLA211 4.3 115.9 1.0 C3C A:CLA211 4.4 115.9 1.0 C3A A:CLA211 4.4 115.9 1.0 C2A A:CLA211 4.4 115.9 1.0 CBD A:CLA211 4.9 115.9 1.0

Magnesium binding site 10 out of 244 in the Psi-Fcpi-L in Thalassiosira Pseudonana


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Psi-Fcpi-L in Thalassiosira Pseudonana within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg306 b:107.4 occ:1.00 MG B:CLA306 0.0 107.4 1.0 NB B:CLA306 2.0 107.4 1.0 ND B:CLA306 2.0 107.4 1.0 NA B:CLA306 2.1 107.4 1.0 NC B:CLA306 2.1 107.4 1.0 OE1 B:GLU43 2.7 111.7 1.0 C4D B:CLA306 2.9 107.4 1.0 C1B B:CLA306 3.0 107.4 1.0 C4B B:CLA306 3.0 107.4 1.0 C4A B:CLA306 3.0 107.4 1.0 C1C B:CLA306 3.1 107.4 1.0 C1D B:CLA306 3.1 107.4 1.0 C1A B:CLA306 3.1 107.4 1.0 C4C B:CLA306 3.1 107.4 1.0 CHB B:CLA306 3.4 107.4 1.0 CHC B:CLA306 3.4 107.4 1.0 CHA B:CLA306 3.5 107.4 1.0 CHD B:CLA306 3.5 107.4 1.0 CD B:GLU43 3.8 111.7 1.0 OE2 B:GLU43 4.1 111.7 1.0 C2B B:CLA306 4.2 107.4 1.0 C3D B:CLA306 4.2 107.4 1.0 C3B B:CLA306 4.2 107.4 1.0 C2C B:CLA306 4.3 107.4 1.0 C2D B:CLA306 4.3 107.4 1.0 C3C B:CLA306 4.4 107.4 1.0 C3A B:CLA306 4.4 107.4 1.0 C2A B:CLA306 4.4 107.4 1.0 C1 B:CLA306 4.6 107.4 1.0 CMD B:KC1313 4.7 102.0 1.0 O2A B:CLA306 4.8 107.4 1.0 CBD B:CLA306 4.9 107.4 1.0

Y.Feng, Z.Li, Y.Yang, L.Shen, X.Li, X.Liu, X.Zhang, J.Zhang, F.Ren, Y.Wang, C.Liu, G.Han, X.Wang, T.Kuang, J.R.Shen, W.Wang. Structures of Psi-Fcpi From Thalassiosira Pseudonana Grown Under High Light Provide Evidence For Convergent Evolution and Light-Adaptive Strategies in Diatom Fcpis. J Integr Plant Biol 2024.
ISSN: ESSN 1744-7909
PubMed: 39670505
DOI: 10.1111/JIPB.13816