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Magnesium in PDB 8zm3: Cryo-Em Strcuture of CAS5-Hnh Cascade,Apo-CONF2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Strcuture of CAS5-Hnh Cascade,Apo-CONF2 (pdb code 8zm3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Strcuture of CAS5-Hnh Cascade,Apo-CONF2, PDB code: 8zm3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8zm3

Go back to Magnesium Binding Sites List in 8zm3
Magnesium binding site 1 out of 2 in the Cryo-Em Strcuture of CAS5-Hnh Cascade,Apo-CONF2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Strcuture of CAS5-Hnh Cascade,Apo-CONF2 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg601

b:82.5
occ:1.00
SG C:CYS218 2.4 96.0 1.0
SG C:CYS311 2.5 96.2 1.0
CB C:CYS218 3.1 96.0 1.0
SG C:CYS215 3.4 98.3 1.0
N C:CYS215 3.5 98.3 1.0
CB C:SER313 3.7 84.6 1.0
CA C:LEU214 3.9 101.1 1.0
CB C:LEU214 4.1 101.1 1.0
CD2 C:LEU214 4.2 101.1 1.0
C C:LEU214 4.3 101.1 1.0
CB C:CYS215 4.3 98.3 1.0
CB C:CYS311 4.3 96.2 1.0
OG C:SER313 4.4 84.6 1.0
N C:SER313 4.4 84.6 1.0
CA C:CYS215 4.5 98.3 1.0
CA C:CYS218 4.6 96.0 1.0
CA C:SER313 4.6 84.6 1.0
N C:CYS314 4.7 85.5 1.0
CG C:LEU214 4.8 101.1 1.0
O C:GLY213 4.9 101.0 1.0
N C:CYS312 4.9 90.8 1.0
N C:CYS218 4.9 96.0 1.0
O C:CYS215 5.0 98.3 1.0

Magnesium binding site 2 out of 2 in 8zm3

Go back to Magnesium Binding Sites List in 8zm3
Magnesium binding site 2 out of 2 in the Cryo-Em Strcuture of CAS5-Hnh Cascade,Apo-CONF2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Strcuture of CAS5-Hnh Cascade,Apo-CONF2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:23.5
occ:1.00
SG B:CYS298 2.3 28.1 1.0
SG B:CYS332 2.3 26.8 1.0
SG B:CYS301 2.3 27.6 1.0
SG B:CYS329 2.8 27.4 1.0
CB B:CYS332 3.2 26.8 1.0
NH1 B:ARG365 3.4 26.6 1.0
CB B:CYS298 3.6 28.1 1.0
N B:CYS329 3.9 27.4 1.0
CB B:CYS329 3.9 27.4 1.0
CB B:CYS301 4.0 27.6 1.0
N B:CYS332 4.1 26.8 1.0
N B:CYS301 4.3 27.6 1.0
CA B:CYS332 4.3 26.8 1.0
CA B:CYS329 4.4 27.4 1.0
CA B:CYS301 4.7 27.6 1.0
CZ B:ARG365 4.7 26.6 1.0
CB B:LEU328 4.8 26.9 1.0
C B:CYS329 4.8 27.4 1.0
CB B:VAL300 4.9 26.0 1.0
C B:LEU328 4.9 26.9 1.0
CA B:CYS298 4.9 28.1 1.0
CA B:LEU328 5.0 26.9 1.0
O B:CYS329 5.0 27.4 1.0

Reference:

Y.N.Liu, L.Wang. Cryo-Em Structure of CAS5-Hnh Cascade,Apo-CONF2 To Be Published.
Page generated: Fri Aug 15 22:43:10 2025

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