Magnesium in PDB 9b3j: Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0

The binding sites of Magnesium atom in the Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0 (pdb code 9b3j). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0, PDB code: 9b3j:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:80.1 occ:1.00 O2B A:ATP601 1.8 105.0 1.0 OG1 A:THR176 2.0 89.9 1.0 O2G A:ATP601 2.0 108.6 1.0 PB A:ATP601 3.1 105.4 1.0 CB A:THR176 3.2 86.4 1.0 PG A:ATP601 3.3 107.9 1.0 O3B A:ATP601 3.5 109.1 1.0 OD2 A:ASP269 3.7 87.8 1.0 O1B A:ATP601 4.0 107.9 1.0 N A:THR176 4.0 86.0 1.0 CG2 A:THR176 4.1 80.8 1.0 OD1 A:ASP269 4.1 84.9 1.0 CA A:THR176 4.2 87.0 1.0 O3A A:ATP601 4.3 105.3 1.0 O3G A:ATP601 4.3 107.3 1.0 CG A:ASP269 4.3 82.7 1.0 O1G A:ATP601 4.3 105.5 1.0 O1A A:ATP601 4.4 107.9 1.0 PA A:ATP601 4.7 104.0 1.0 O2A A:ATP601 4.8 108.1 1.0

Magnesium binding site 2 out of 4 in the Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:71.4 occ:1.00 O2B B:ATP601 1.8 100.5 1.0 O2G B:ATP601 1.9 97.2 1.0 OG1 B:THR176 2.0 80.9 1.0 PB B:ATP601 3.0 97.8 1.0 CB B:THR176 3.1 81.4 1.0 PG B:ATP601 3.2 102.5 1.0 O3B B:ATP601 3.4 93.6 1.0 O1B B:ATP601 3.7 90.9 1.0 CG2 B:THR176 4.0 80.4 1.0 N B:THR176 4.2 79.3 1.0 O3G B:ATP601 4.2 95.8 1.0 OD1 B:ASP269 4.2 91.7 1.0 O1G B:ATP601 4.2 92.1 1.0 CA B:THR176 4.2 80.4 1.0 O3A B:ATP601 4.2 91.8 1.0 OD2 B:ASP269 4.3 94.1 1.0 O1A B:ATP601 4.3 95.0 1.0 CG B:ASP269 4.7 89.2 1.0 PA B:ATP601 4.7 89.5 1.0 O2A B:ATP601 5.0 93.4 1.0

Magnesium binding site 3 out of 4 in the Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:86.3 occ:1.00 O2B C:ATP601 1.9 117.4 1.0 O2G C:ATP601 2.0 117.2 1.0 OG1 C:THR176 2.0 87.4 1.0 CB C:THR176 3.1 87.9 1.0 PB C:ATP601 3.1 109.7 1.0 PG C:ATP601 3.3 118.4 1.0 O3B C:ATP601 3.4 118.8 1.0 CG2 C:THR176 4.0 88.1 1.0 OD1 C:ASP269 4.0 88.5 1.0 O1B C:ATP601 4.0 111.7 1.0 N C:THR176 4.1 89.6 1.0 O1A C:ATP601 4.1 114.8 1.0 O3G C:ATP601 4.2 112.9 1.0 CA C:THR176 4.2 88.2 1.0 OD2 C:ASP269 4.2 88.7 1.0 O1G C:ATP601 4.3 117.1 1.0 O3A C:ATP601 4.3 108.7 1.0 CG C:ASP269 4.5 88.5 1.0 PA C:ATP601 4.6 110.2 1.0 NE2 C:GLN208 4.8 96.8 1.0 O2A C:ATP601 4.9 115.4 1.0

Magnesium binding site 4 out of 4 in the Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Artemia Franciscana Atp Synthase State 2 (Composite Structure), pH 8.0 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg602 b:89.9 occ:1.00 O2B D:ATP601 2.1 114.8 1.0 OG1 D:THR166 2.1 93.8 1.0 O2G D:ATP601 2.2 110.2 1.0 PB D:ATP601 3.3 106.7 1.0 OE2 D:GLU195 3.4 111.2 1.0 PG D:ATP601 3.4 110.7 1.0 CB D:THR166 3.5 92.5 1.0 OE1 D:GLU191 3.5 122.5 1.0 O3B D:ATP601 3.5 103.9 1.0 NH1 D:ARG192 3.9 109.2 1.0 N D:THR166 4.0 93.1 1.0 O1A D:ATP601 4.0 106.6 1.0 O3G D:ATP601 4.1 106.3 0.5 OE1 D:GLU195 4.1 108.6 1.0 CD D:GLU195 4.1 109.8 1.0 O3A D:ATP601 4.2 103.1 0.2 CA D:THR166 4.3 89.8 1.0 CD D:GLU191 4.3 120.8 1.0 O2A D:ATP601 4.3 103.9 1.0 PA D:ATP601 4.3 99.7 1.0 CG2 D:THR166 4.4 95.8 1.0 O1B D:ATP601 4.4 106.1 1.0 O1G D:ATP601 4.6 109.5 1.0 OD2 D:ASP259 4.6 100.8 1.0 OE2 D:GLU191 4.7 121.5 1.0 OD1 D:ASP259 4.9 103.2 1.0 C D:LYS165 5.0 88.5 1.0

A.Kumar, J.Da Fonseca Rezende E Mello, Y.Wu, D.Morris, I.Mezghani, E.Smith, S.Rombauts, P.Bossier, J.Krahn, F.J.Sigworth, N.Mnatsakanyan. Cryo-Em Structure of the Brine Shrimp Mitochondrial Atp Synthase Suggests An Inactivation Mechanism For the Atp Synthase Leak Channel. Cell Death Differ. 2025.
ISSN: ISSN 1350-9047
PubMed: 40108410
DOI: 10.1038/S41418-025-01476-W