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Magnesium in PDB 9bcu: Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna

Enzymatic activity of Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna

All present enzymatic activity of Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna:
2.7.7.6;

Other elements in 9bcu:

The structure of Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna (pdb code 9bcu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna, PDB code: 9bcu:

Magnesium binding site 1 out of 1 in 9bcu

Go back to Magnesium Binding Sites List in 9bcu
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Thermococcus Kodakarensis Ftta-Dependent Transcription Pre-Termination Complex Containing 52 Nt Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1001

b:55.8
occ:1.00
OD1 A:ASP463 2.1 57.5 1.0
O3' 7:C-1 2.1 90.9 1.0
OD1 A:ASP461 2.1 62.8 1.0
OD1 A:ASP465 2.4 61.4 1.0
CG A:ASP461 2.7 54.4 1.0
OD2 A:ASP461 2.8 58.3 1.0
CG A:ASP463 3.0 51.8 1.0
C3' 7:C-1 3.1 94.7 1.0
OD2 A:ASP463 3.2 49.2 1.0
C5' 7:C-1 3.2 90.9 1.0
CG A:ASP465 3.3 54.7 1.0
C4' 7:C-1 3.3 92.1 1.0
OD2 A:ASP465 3.4 53.6 1.0
CB A:ASP461 4.0 44.0 1.0
O5' 7:C-1 4.1 100.8 1.0
O A:ASP463 4.3 60.6 1.0
CB A:ASP463 4.3 45.1 1.0
C2' 7:C-1 4.4 95.3 1.0
N A:ASP463 4.4 44.7 1.0
N A:ASP461 4.5 50.1 1.0
O2' 7:C-1 4.6 93.6 1.0
C A:ASP461 4.6 40.3 1.0
CA A:ASP461 4.6 43.1 1.0
C A:ASP463 4.6 46.1 1.0
O A:ASP461 4.7 51.1 1.0
CA A:ASP463 4.7 39.8 1.0
CB A:ASP465 4.7 50.2 1.0
O4' 7:C-1 4.7 94.3 1.0
OP1 7:C-1 5.0 94.4 1.0

Reference:

L.You, R.H.Ebright. Structural Basis of Archaeal Ftta-Dependent Transcription Termination To Be Published.
Page generated: Fri Aug 15 23:16:18 2025

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