Magnesium in PDB 9blf: Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp

All present enzymatic activity of Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp:
2.7.7.48; 2.7.7.50;

The structure of Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp (pdb code 9blf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp, PDB code: 9blf:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1003 b:79.0 occ:1.00 O1A A:HF41006 2.6 130.3 1.0 O A:TYR619 2.8 75.0 1.0 HB2 A:CYS622 2.9 70.0 1.0 OD1 A:ASP618 3.1 75.1 1.0 O3A A:HF41006 3.2 135.6 1.0 PA A:HF41006 3.5 138.3 1.0 HB2 A:TYR619 3.6 64.2 1.0 H A:TYR619 3.6 68.4 1.0 CB A:CYS622 3.8 72.6 1.0 HB3 A:CYS622 3.8 71.5 1.0 C A:TYR619 3.9 66.7 1.0 HB3 A:ASP760 3.9 66.4 1.0 H A:CYS622 4.0 69.7 1.0 OD2 A:ASP760 4.2 87.1 1.0 O5' A:HF41006 4.2 118.7 1.0 N A:TYR619 4.2 69.4 1.0 CG A:ASP618 4.2 78.1 1.0 O2G A:HF41006 4.3 112.2 1.0 HB2 A:ASP760 4.4 66.8 1.0 CB A:TYR619 4.4 62.8 1.0 CA A:TYR619 4.4 64.1 1.0 H11 A:HF41006 4.4 105.7 1.0 O3B A:HF41006 4.4 132.8 1.0 CB A:ASP760 4.5 66.2 1.0 CG A:ASP760 4.5 74.8 1.0 PB A:HF41006 4.5 152.0 1.0 N A:CYS622 4.6 70.4 1.0 OD2 A:ASP618 4.6 85.6 1.0 SG A:CYS622 4.7 79.4 1.0 HA A:PRO620 4.7 66.7 1.0 CA A:CYS622 4.8 70.5 1.0 O2A A:HF41006 4.8 121.0 1.0 HB3 A:TYR619 4.8 61.9 1.0 HD1 A:TYR619 4.8 59.8 1.0 N A:PRO620 5.0 61.1 1.0

Magnesium binding site 2 out of 2 in the Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Sars-Cov-2 Core Polymerase Complex Inhibited By Aractp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1005 b:87.1 occ:1.00 OD1 A:ASN209 1.9 74.6 1.0 OD2 A:ASP218 2.0 99.0 1.0 HD22 A:ASN209 2.4 68.3 1.0 CG A:ASN209 2.6 64.1 1.0 ND2 A:ASN209 2.8 69.7 1.0 CG A:ASP218 3.1 89.3 1.0 O2A A:HF41004 3.5 101.5 1.0 HB2 A:ASP218 3.5 77.0 1.0 HD21 A:ASN209 3.7 64.8 1.0 O3A A:HF41004 3.7 123.2 1.0 CB A:ASP218 3.7 79.4 1.0 HB3 A:ASP218 3.8 78.6 1.0 OD2 A:ASP208 3.8 65.5 1.0 CB A:ASN209 4.1 55.6 1.0 OD1 A:ASP218 4.1 86.4 1.0 PA A:HF41004 4.2 122.7 1.0 HA A:ASN209 4.3 57.3 1.0 O2B A:HF41004 4.3 125.0 1.0 HG1 A:THR206 4.3 61.1 1.0 HB3 A:ASN209 4.5 58.0 1.0 OG1 A:THR206 4.5 64.9 1.0 PB A:HF41004 4.6 132.3 1.0 HB2 A:ASN209 4.6 57.5 1.0 CA A:ASN209 4.6 56.2 1.0 CG A:ASP208 4.6 64.9 1.0 O3G A:HF41004 4.6 121.2 1.0 O A:ASP208 4.8 58.3 1.0 O3B A:HF41004 4.9 130.6 1.0 N A:ASN209 4.9 58.2 1.0

T.K.Anderson, R.N.Kirchdoerfer. Structure of the Sars-Cov-2 Core-Rtc Bound to Rna, Aracmp, and Aractp To Be Published.