Magnesium in PDB 9blz: State-1(Phi Motor) of Full-Length Human Dynein-1 in 5MM Atp

The binding sites of Magnesium atom in the State-1(Phi Motor) of Full-Length Human Dynein-1 in 5MM Atp (pdb code 9blz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the State-1(Phi Motor) of Full-Length Human Dynein-1 in 5MM Atp, PDB code: 9blz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the State-1(Phi Motor) of Full-Length Human Dynein-1 in 5MM Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-1(Phi Motor) of Full-Length Human Dynein-1 in 5MM Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:7.2 occ:1.00 O A:HOH5554 2.1 8.2 1.0 O A:HOH5188 2.1 7.6 1.0 O A:HOH5172 2.1 5.1 1.0 O A:HOH5232 2.1 10.8 1.0 OG1 A:THR1913 2.1 7.3 1.0 O3B A:ADP4701 2.1 4.0 1.0 CB A:THR1913 3.0 5.2 1.0 PB A:ADP4701 3.2 2.4 1.0 O1B A:ADP4701 3.3 4.8 1.0 N A:THR1913 3.5 3.1 1.0 O2A A:ADP4701 3.8 11.4 1.0 CA A:THR1913 3.9 3.8 1.0 NH2 A:ARG2358 3.9 8.4 1.0 OD2 A:ASP1958 3.9 12.8 1.0 O3A A:ADP4701 4.0 5.5 1.0 O1A A:ADP4701 4.1 3.7 1.0 PA A:ADP4701 4.1 3.4 1.0 CG2 A:THR1913 4.2 5.9 1.0 OG1 A:THR2017 4.3 7.5 1.0 CG A:ASP1958 4.4 11.4 1.0 O2B A:ADP4701 4.4 7.2 1.0 CB A:LYS1912 4.6 3.7 1.0 NH2 A:ARG2091 4.7 5.2 1.0 C A:LYS1912 4.7 2.4 1.0 O A:HOH5154 4.7 14.6 1.0 CB A:ASP1958 4.8 8.8 1.0 CB A:THR2017 4.8 6.1 1.0 O A:HOH5592 4.9 13.5 1.0 CE A:LYS1912 4.9 4.0 1.0 OD1 A:ASP1958 5.0 11.1 1.0 N A:LYS1912 5.0 3.4 1.0

Magnesium binding site 2 out of 2 in the State-1(Phi Motor) of Full-Length Human Dynein-1 in 5MM Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of State-1(Phi Motor) of Full-Length Human Dynein-1 in 5MM Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:2.6 occ:1.00 OG A:SER2231 1.9 5.3 1.0 O2G A:ATP4702 1.9 5.4 1.0 OE2 A:GLU2344 2.1 9.6 1.0 O A:HOH4887 2.1 4.0 1.0 O A:HOH4823 2.1 3.9 1.0 O2B A:ATP4702 2.7 1.8 1.0 PG A:ATP4702 3.0 2.6 1.0 O3B A:ATP4702 3.0 3.5 1.0 CD A:GLU2344 3.1 4.6 1.0 CB A:SER2231 3.2 2.2 1.0 PB A:ATP4702 3.4 1.3 1.0 OE2 A:GLU2688 3.5 13.6 1.0 O1A A:ATP4702 3.5 8.3 1.0 OE1 A:GLU2344 3.7 2.8 1.0 O3G A:ATP4702 3.8 5.1 1.0 O A:HOH5067 3.9 22.1 1.0 N A:SER2231 4.1 2.0 1.0 NH2 A:ARG2726 4.1 3.3 1.0 OD2 A:ASP2304 4.1 7.0 1.0 CG A:GLU2344 4.2 5.6 1.0 CA A:SER2231 4.2 1.8 1.0 O1G A:ATP4702 4.2 4.3 1.0 NH2 A:ARG2684 4.2 6.1 1.0 O3A A:ATP4702 4.3 3.3 1.0 PA A:ATP4702 4.5 3.4 1.0 OD1 A:ASP2304 4.5 5.8 1.0 O A:HOH6439 4.5 9.8 1.0 CD A:GLU2688 4.5 12.3 1.0 O A:HOH5358 4.6 3.0 1.0 O1B A:ATP4702 4.7 2.6 1.0 CG A:ASP2304 4.7 5.7 1.0 OE1 A:GLU2688 4.8 18.2 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.