Magnesium in PDB 9bm0: State-2 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atp

The binding sites of Magnesium atom in the State-2 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atp (pdb code 9bm0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the State-2 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atp, PDB code: 9bm0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the State-2 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of State-2 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4705 b:15.7 occ:1.00 OG1 A:THR1913 2.0 18.8 1.0 O A:HOH4801 2.0 13.6 1.0 O A:HOH4803 2.0 12.8 1.0 O A:HOH4802 2.0 8.9 1.0 O3B A:ADP4701 2.3 10.1 1.0 CB A:THR1913 2.5 7.6 1.0 O1B A:ADP4701 3.2 11.0 1.0 PB A:ADP4701 3.3 4.7 1.0 CG2 A:THR1913 3.6 9.5 1.0 N A:THR1913 3.6 5.6 1.0 CA A:THR1913 3.6 5.4 1.0 O1A A:ADP4701 4.0 6.3 1.0 NH2 A:ARG2358 4.0 16.0 1.0 O2A A:ADP4701 4.0 20.7 1.0 O3A A:ADP4701 4.1 7.4 1.0 OD1 A:ASP1958 4.1 15.7 1.0 PA A:ADP4701 4.2 4.6 1.0 CG A:ASP1958 4.4 21.2 1.0 O2B A:ADP4701 4.6 7.7 1.0 CB A:ASP1958 4.6 16.8 1.0 C A:LYS1912 4.8 6.7 1.0 C A:THR1913 4.9 10.3 1.0 CG2 A:THR2017 4.9 15.5 1.0 OD2 A:ASP2320 5.0 18.1 1.0

Magnesium binding site 2 out of 2 in the State-2 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of State-2 of Motor Domain From Full-Length Human Dynein-1 in 5MM Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4706 b:4.6 occ:1.00 OE2 A:GLU2344 2.0 3.6 1.0 O2G A:ATP4702 2.3 7.9 1.0 OG A:SER2231 2.4 8.1 1.0 O2B A:ATP4702 2.6 2.0 1.0 CB A:SER2231 2.9 2.5 1.0 CD A:GLU2344 3.2 3.4 1.0 O1A A:ATP4702 3.4 13.7 1.0 O3B A:ATP4702 3.5 4.9 1.0 PG A:ATP4702 3.6 3.8 1.0 OD2 A:ASP2304 3.7 12.6 1.0 PB A:ATP4702 3.7 0.5 1.0 OE1 A:GLU2344 3.7 6.0 1.0 CA A:SER2231 4.1 2.0 1.0 OE2 A:GLU2688 4.1 17.6 1.0 N A:SER2231 4.1 1.7 1.0 NH2 A:ARG2726 4.1 4.1 1.0 NH2 A:ARG2684 4.2 8.8 1.0 O3A A:ATP4702 4.3 2.1 1.0 CG A:GLU2344 4.4 2.4 1.0 O1G A:ATP4702 4.4 4.9 1.0 PA A:ATP4702 4.5 3.8 1.0 NH1 A:ARG2729 4.5 7.6 1.0 CD A:GLU2688 4.5 13.7 1.0 CG A:ASP2304 4.6 9.9 1.0 O3G A:ATP4702 4.6 3.5 1.0 OD1 A:ASP2304 4.7 10.2 1.0 OE1 A:GLU2688 4.7 13.6 1.0 O1B A:ATP4702 4.9 2.4 1.0

P.Chai, K.Zhang. Cryo-Em Reveals the Mechanochemical Cycle of Reactive Full-Length Human Dynein-1. To Be Published.